View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_high_3 (Length: 335)
Name: NF17834_high_3
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 5866619 - 5866925
Alignment:
| Q |
14 |
aggtcatgttatttctttgaatcttcattgttctaattccttagataaacttcagggtcatttaaattcatctttgctacaattgccatatttaagttat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866619 |
aggtcatgttatttctttgaatcttcattgttctaattccttagataaacttcagggtcatttaaattcatctttgctacaattgccatatttaagttat |
5866718 |
T |
|
| Q |
114 |
ttgaaccttagtggcaatgatttcatgcaatccacagtgcctgattttctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaatttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866719 |
ttgaaccttagtggcaatgatttcatgcaatccacagtgcctgattttctaagtactacgaaaaatttaaaacatcttgacctatctcatgccaatttta |
5866818 |
T |
|
| Q |
214 |
aggggaacctcttagataatcttggaaacctttctctacttgaatcacttgatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5866819 |
aggggaacctcttagataatcttggaaacctttctctacttgaatcacttgatttgagtgacaatagtttctatgtcaataatctaaaatggcttcatgg |
5866918 |
T |
|
| Q |
314 |
actttct |
320 |
Q |
| |
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||||||| |
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|
| T |
5866919 |
actttct |
5866925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 5865165 - 5865203
Alignment:
| Q |
14 |
aggtcatgttatttctttgaatcttcattgttctaattc |
52 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5865165 |
aggtcatgttatttctttgaatcttcattgttctaattc |
5865203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 36978452 - 36978146
Alignment:
| Q |
14 |
aggtcatgttatttctttgaatcttcattgttctaattccttagataaacttcagggtcatttaaattcatctttgctacaattgccatatttaagttat |
113 |
Q |
| |
|
|||||||||||| || | ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |
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| T |
36978452 |
aggtcatgttatctcccttaatctctattgttctaattccttagataaacttcagggtcagttaagttcatctttgctcaaattgccatatttaagttat |
36978353 |
T |
|
| Q |
114 |
ttgaaccttagtggcaatgatttcatgcaatccacagtgcctgattttctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaatttta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978352 |
ttgaaccttagtggcaatgatttcatgcaatccacagtgcctgattttctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaatttta |
36978253 |
T |
|
| Q |
214 |
aggggaacctcttagataatcttggaaacctttctctacttgaatcacttgatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatgg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36978252 |
aggggaacctcttagataatcttggaaacctttctctacttgaatcacttcatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatgg |
36978153 |
T |
|
| Q |
314 |
actttct |
320 |
Q |
| |
|
||||||| |
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|
| T |
36978152 |
actttct |
36978146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 36966710 - 36966404
Alignment:
| Q |
14 |
aggtcatgttatttctttgaatcttcattgttctaattccttagataaacttcagggtcatttaaattcatctttgctacaattgccatatttaagttat |
113 |
Q |
| |
|
||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||| |
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|
| T |
36966710 |
aggtcatgttatttcccttgatctctattgctctaattccttagataaacttcagggtcatgtaagttcagcattgctacaattgccatatttaagttat |
36966611 |
T |
|
| Q |
114 |
ttgaaccttagtggcaatgatttcatgcaatccacagtgcctgattttctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaatttta |
213 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| | ||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36966610 |
ttgaacctaactggcaatgatttcatgcaatctagagtgcctgactttcttggtaatatgcaaaatttaaaacatcttgacctatctcatgccaatttta |
36966511 |
T |
|
| Q |
214 |
aggggaacctcttagataatcttggaaacctttctctacttgaatcacttgatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatgg |
313 |
Q |
| |
|
|||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
36966510 |
agggcaacctctctgataatcttgtaaacctgtctctacttgaatcacttgatttgagtggcaatgctttctatgtcaataatctaaaatggcttcaagg |
36966411 |
T |
|
| Q |
314 |
actttct |
320 |
Q |
| |
|
||||||| |
|
|
| T |
36966410 |
actttct |
36966404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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