View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17834_low_1 (Length: 832)
Name: NF17834_low_1
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 606
Target Start/End: Original strand, 14538290 - 14538903
Alignment:
| Q |
13 |
attattctctaaattaaaaccaatagtatctaagttggtgtagttaatcatgtgtgagtgggaagtttcaaattagattaaggaatatatacattgatta |
112 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538290 |
attaatctctaaattaaaaccaagagaatctaagttgatgtagttaatcatgtgtgagtgggaagtttcaaattagattaaggaatatatacattgatta |
14538389 |
T |
|
| Q |
113 |
agacattaaggaatttatcatatctctattgccttaaaattttagatttagatattcctattg--------------------tcaactcatttgtgtgg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||| ||||||||| |
|
|
| T |
14538390 |
agacattaaggaatttatcatatctctattgccttaaaattttagatttagaaatccctcttgacttaaaattttagtggttgtcaactcgtttgtgtgg |
14538489 |
T |
|
| Q |
193 |
atgctcttaatttaatgtaatgatcccaactattttagtcttccttaagcgtgaacatatgtggtatatgatcacttagtgatcctaaatcattaacttg |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14538490 |
atgctcttaatttaatataatgatcccaactattttagtcttccttaagcatgaacatatgtggtttatgatcacttagtgatcctaaatcattaacttg |
14538589 |
T |
|
| Q |
293 |
ttgatttgaacgctctcccaactctataacttgtgatatcataagcctggtgatgcggcttgatggagagcgagagtggatacccgtattaaaagtttct |
392 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14538590 |
ttgatttgaacgctctccgaactctataacttgtgatatcataagcctggtggtgcggcttgatggagagcgagagtggatacccgtattaaaaagttct |
14538689 |
T |
|
| Q |
393 |
tgacggtgtaatcacaagatgtgttacgttggtaataacaacgttatgagtacaagatgttggagactcactcacacttaacctaatgtgatgatctcac |
492 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14538690 |
tgacggtgtaatcacaagacgtgttacgttggtaataacaacattaagagtataagatgttggagactcactcactcttaacctaatgtgatgatctcac |
14538789 |
T |
|
| Q |
493 |
gtgttttacacctcctctgaatttaggcatatatattgtaaaatctttttacaaattaacacaaaacatagtaagatttatactcttggtgcatagagat |
592 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
14538790 |
gtgtttaacacctcctctgaatttaggcatatatattgtaaaatctttttaaaaattaacacaatacatagtaagatttatagcgttggtgcatagagat |
14538889 |
T |
|
| Q |
593 |
ttatacaaaatata |
606 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14538890 |
ttatacaaaatata |
14538903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 629 - 817
Target Start/End: Original strand, 14538966 - 14539154
Alignment:
| Q |
629 |
atcactttatatataaaaccaatcaatgaacattcataatcatacacacaaagtaacatttatacaagtgagtgagaatcttaccggtggtctactgtga |
728 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538966 |
atcactttatatataaaaccaatcaatgatcattcataatcatacacacaaagtaccatttatacaagtgagtgagaatcttaccggtggtctactgtga |
14539065 |
T |
|
| Q |
729 |
caaacagaatcatggtcgtctatggtggtggtcctggtgcactgcttctcagagctggtgttatccatagaagctattgaagttgaagt |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539066 |
caaacagaatcatggtcgtctatggtggtggtcctggtgcactgcttctcagagctggtgttatccatagaagctattgaagttgaagt |
14539154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University