View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_low_10 (Length: 305)
Name: NF17834_low_10
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 8519584 - 8519284
Alignment:
| Q |
1 |
ctaaaacgctccaacaatgtcatcggagatggaatcttgttcttgtatgagttgcttttaagccttggcatgcattgacccttcatcattttgacacttt |
100 |
Q |
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| T |
8519584 |
ctaaaacgctctaacaatgtcatcggagatggaatcttgttcttgtatgagttgcttttaagccttggcatgcattgacccttcatcattttgacacttt |
8519485 |
T |
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| Q |
101 |
cttctttgttcctaggagaatctatatttgcattggacaatgattcataaatatatgtttggtttatattgtttaaaattttaaggtgatatgaattaaa |
200 |
Q |
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| T |
8519484 |
cttctttgttcctaggagaatctatatttgcattggacaatgattcataaatatatgtttggtttatattgtttaaaattttaaggtgatatgaattaaa |
8519385 |
T |
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| Q |
201 |
atgtacttgtatttgtttatgtggaatttagctgtgtgtcttgttactttggcatcttaattatatatataaggtttgactaatatagtgcttagttggt |
300 |
Q |
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| T |
8519384 |
atgtacttgtatttgtttatgtggaatttagctgcgtgtcttgttactttggcatcttaatta----tataaggtttgactaatatagtgcttagttggt |
8519289 |
T |
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| Q |
301 |
tttta |
305 |
Q |
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||||| |
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| T |
8519288 |
tttta |
8519284 |
T |
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