View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_low_12 (Length: 246)
Name: NF17834_low_12
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33659017 - 33658770
Alignment:
| Q |
1 |
ccccaactcaatggcatcttccctccttcattggcttcgtatattgacatttgctctgtctgcaaaacagttttattagttgaatcaataattattaatg |
100 |
Q |
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| T |
33659017 |
ccccaactcaatggcatcttccctccttcattggcttcgtatattgacatttgctctgtctacaaaacagttttattagttgaatcaataattattaatg |
33658918 |
T |
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| Q |
101 |
attttcaacacttatggcctacaaagatttt-----------------gaggaccaataagaacacttacttttatggcttcaagaagtttctggtgatc |
183 |
Q |
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| T |
33658917 |
attttcaacacttatggcctacaaagattttgaaaaaaatctttgtaagaggaccaataagaacacttacttttatggcttcaagaagtttctggtgatc |
33658818 |
T |
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| Q |
184 |
atgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
231 |
Q |
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| T |
33658817 |
atgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
33658770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 33699542 - 33699456
Alignment:
| Q |
145 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
231 |
Q |
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| T |
33699542 |
aacacttacttttatggcttcaagaagtttctggtgatcatgaagatacttgagaatccaagtaagaacacttgctgtagtatcttg |
33699456 |
T |
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