View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17834_low_14 (Length: 242)
Name: NF17834_low_14
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 1764438 - 1764576
Alignment:
| Q |
6 |
gagaagcaaagggtacatgccaccgacaacaaccaatttcaatcagacgcataagaaccaagatcgagggatgagtttagtatgttagtattcaaacaga |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1764438 |
gagaatcaaagggtacatgccaccgacaacaaccaatttcaatcagacgcgtaagaaccaagatcgagggatgagtttagtatgttagtattcaaacata |
1764537 |
T |
|
| Q |
106 |
ccctttcaggtttagtaatggagctacatagaaaggcct |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1764538 |
ccctttcaggtttagtaatggagctacatagaaaggcct |
1764576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 1763602 - 1763710
Alignment:
| Q |
6 |
gagaagcaaagggtacatgccaccgacaacaaccaatttcaatcagacgcataagaaccaagatcgagggatgagtttagtatgttagtattcaaacaga |
105 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||| ||| |||| | ||||| |||||||| | || |||||| ||||| | || |
|
|
| T |
1763602 |
gagaatcaaagggtacatacca---acaacaaccaatttcaatcagacgcgtaaaaacctaaatcgacggatgagtccaatacgttagtgttcaaccgga |
1763698 |
T |
|
| Q |
106 |
ccctttcaggtt |
117 |
Q |
| |
|
||||||| |||| |
|
|
| T |
1763699 |
ccctttcgggtt |
1763710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 1764625 - 1764655
Alignment:
| Q |
193 |
cataataacaccaagccaaacatttgtatat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1764625 |
cataataacaccaagccaaacatttgtatat |
1764655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University