View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_low_17 (Length: 219)
Name: NF17834_low_17
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 1228176 - 1227975
Alignment:
| Q |
20 |
cacaggaggaatcattgctaccatgcttgctgctcccaacccaaatgacacttctcgaccc----------------aaattttagaattctacctaaaa |
103 |
Q |
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| T |
1228176 |
cacaggaggaatcattgctaccatgcttgctgctcccaacccaaatgacacttctcgtcctgcatttaccactccagaaattttagaattctacctaaaa |
1228077 |
T |
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| Q |
104 |
tatggtccttcaatattcaatcaaacttctgctaggtatttaatatggtccaacccaatctgctattattgacaactacttctcacgattatttgcattc |
203 |
Q |
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| T |
1228076 |
tatggtccttcaatattcaatcaaacttctgctaggtatttaatatggtccaacccaatctgctattattgacaaccacttctcacggttatttgcattc |
1227977 |
T |
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| Q |
204 |
at |
205 |
Q |
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|| |
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| T |
1227976 |
at |
1227975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 1243510 - 1243447
Alignment:
| Q |
81 |
aaattttagaattctacctaaaatatggtccttcaatattcaatcaaacttctgctaggtattt |
144 |
Q |
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| T |
1243510 |
aaatcttaaaattctacttagactttggtccttctatattcaatcaaacttccgctaggtattt |
1243447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 1254209 - 1254146
Alignment:
| Q |
81 |
aaattttagaattctacctaaaatatggtccttcaatattcaatcaaacttctgctaggtattt |
144 |
Q |
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|||| ||| |||||||| || | | ||||||||| ||||||||||||||||| ||||||||||| |
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| T |
1254209 |
aaatcttaaaattctacttagactttggtccttctatattcaatcaaacttccgctaggtattt |
1254146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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