View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_low_2 (Length: 463)
Name: NF17834_low_2
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 3449207 - 3449634
Alignment:
| Q |
17 |
gttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449207 |
gttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtg |
3449306 |
T |
|
| Q |
117 |
ttgtagactgtgacggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449307 |
ttgtagactgtgacggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtag |
3449406 |
T |
|
| Q |
217 |
gtgaaaagtgatgtatggaattgcttggtgatgggaaataagtatattgagaagagaagaatctagaatgtttgagaatgggttctggaaaattcgaatt |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449407 |
gtgaaaagtgatgcatggaattgcttggtgatgggaaataagtatactgagaagagaagaatctagaatgtttgagaatgggttctggaaaattcgaatt |
3449506 |
T |
|
| Q |
317 |
tgaacaaaaagaaggtttgaatgagttggaatggttcatgatgtgtaaaggtttgattctgtttttctgatggaatattctgaacagttactgcaatggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3449507 |
tgaacaaaaagaaggtttgaatgagttggaatggttcatgatgtgtaaaggtttgattctgtttttctgatggaat-------------------atggt |
3449587 |
T |
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| Q |
417 |
gaaaatttgagacacacttgtggattttgagaaagttatgaaaattg |
463 |
Q |
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| T |
3449588 |
gaaaatttgagacacacttgtggattttgagaaagttatgaaaattg |
3449634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Original strand, 1 - 415
Alignment:
| Q |
30 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgttgtagactgtga |
129 |
Q |
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| T |
1 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgttgtagactgtga |
100 |
T |
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| Q |
130 |
cggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtaggtgaaaagtgatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101 |
cggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtaggtgaaaagtgatg |
200 |
T |
|
| Q |
230 |
tatggaattgcttggtgatgggaaataagtatattgagaagagaagaatctagaatgtttgagaatgggttctggaaaattcgaatttgaacaaaaagaa |
329 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
201 |
catggaattgcttggtgatgggaaataagtatactgagaagagaagaatctagaatgtttgagaatgggttctggaaaattcgaatttgaacaaaaagaa |
300 |
T |
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| Q |
330 |
ggtttgaatgagttggaatggttcatgatgtgtaaaggtttgattctgtttttctgatggaatattctgaacagttactgcaatggtgaaaatttgagac |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
301 |
ggtttgaatgagttggaatggttcatgatgtgtaaaggtttgattctgtttttctgatggaat-------------------atggtgaaaatttgagac |
381 |
T |
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| Q |
430 |
acacttgtggattttgagaaagttatgaaaattg |
463 |
Q |
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| T |
382 |
acacttgtggattttgagaaagttatgaaaattg |
415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 46205289 - 46205409
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
46205289 |
ttggtgacgtggagaattgcgccgccacagagggtttgggtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcggtggttt |
46205388 |
T |
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| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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||||||||||||| ||||||| |
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| T |
46205389 |
tgtagactgtgacagtggtgt |
46205409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 41587679 - 41587560
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
41587679 |
ttggtgacgtggagaattgcgccgccgcagagggtttg-gtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcggtggttt |
41587581 |
T |
|
| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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||||||||||||||||||||| |
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| T |
41587580 |
tgtagactgtgacggtggtgt |
41587560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 35038901 - 35038781
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | |
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| T |
35038901 |
ttggtgacgtggagaattgcgccgccgcatagggtttgggtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcagtgattt |
35038802 |
T |
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| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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||||||||||||||||||||| |
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| T |
35038801 |
tgtagactgtgacggtggtgt |
35038781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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