View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17834_low_5 (Length: 424)
Name: NF17834_low_5
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 42593711 - 42594102
Alignment:
| Q |
21 |
caaaacttgataaatacgaaagaagggatagaaatagggtttcgcttgcacagaattcccaggtcacgaaaatggctaacattttgaaacctaattcagc |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42593711 |
caaaacttgataaacacgaaagaagggatagaaatagggtttcgcttgcacagaattcccaggtcacgaaaatggctaacattttgaaacctaattcagc |
42593810 |
T |
|
| Q |
121 |
cagaatcgcactgcgtgctatcccccgcccgttcgcggcagcggcggcatcagctacaccagcatccatcgcctctcgattctcctcagttcgctgtatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
42593811 |
tagaatcgcactgcgtgctatcccccgcccgttcgcggcagcggcggcatcagctacaccagcatccatcccctcccgattctcctcagttcgctgtatt |
42593910 |
T |
|
| Q |
221 |
tgttgttttaacagccgacaccgctatgatcataagcctgtgttagttaaatttatcctccttaacgaggttttgcaataataatagtaatatcattatt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42593911 |
tgttgttttaacagccgacaccgctatgatcataagcctgtgttagttaaatttattctccttaaagaggttttgcaataataatagtaatatcattatt |
42594010 |
T |
|
| Q |
321 |
taaatctattgtttgattttttgaccaggtattattggcgaccaccaataaacttaggaattcactttgtgccggagcagacagtatatatt |
412 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42594011 |
taaatctattgtttgattttttgatcaggtattattggcaaccaccgataaacttcggaattcactttgtgccggagcagacagtatatatt |
42594102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 42570186 - 42570226
Alignment:
| Q |
371 |
aacttaggaattcactttgtgccggagcagacagtatatat |
411 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
42570186 |
aactttggaattcactttgtgccggatcagacagtatatat |
42570226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 42577375 - 42577415
Alignment:
| Q |
371 |
aacttaggaattcactttgtgccggagcagacagtatatat |
411 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
42577375 |
aactttggaattaactttgtgccggagcagacagtgtatat |
42577415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University