View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17834_low_7 (Length: 363)

Name: NF17834_low_7
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17834_low_7
NF17834_low_7
[»] chr3 (1 HSPs)
chr3 (53-347)||(44548770-44549065)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 53 - 347
Target Start/End: Complemental strand, 44549065 - 44548770
Alignment:
Q  53 gcacacaacatatagatcaaaaagagggacctaccacagaactatcatcctttcttattgttgtggtagttcatccaaa-cacgatggatccctccatgg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  44549065 gcacacaacatatagatcaaaaagagggacctaccacagaactatcatcctttcttattgttgtggtagttcatcaaaaacacgatggatccctccatgg 44548966  T
Q  152 catgaaccctccttctagtggcgaatgctgatcgataacataacacaaaacatatggatcaaaaagagggcaatacaggagaaccactaaccaaattacc 251  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44548965 catgaaccctccttctagcggcgaatgctgatcgataacataacacaaaacatatggatcaaaaagagggcaatacaggagaaccactaaccaaattacc 44548866  T
Q  252 aagtctaattctaaactaataccatgatgcaagtttttgaagatgatatcatacaatataaattacaagaatattcaaaacttcagatgaagataa 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44548865 aagtctaattctaaactaataccatgatgcaagtttttgaagatgatatcatacaatataaattacaagaatattcaaaacttcagatgaagataa 44548770  T

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