View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17834_low_9 (Length: 330)

Name: NF17834_low_9
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17834_low_9
NF17834_low_9
[»] chr8 (8 HSPs)
chr8 (119-302)||(39188232-39188415)
chr8 (156-231)||(2875793-2875868)
chr8 (156-231)||(2795862-2795937)
chr8 (169-231)||(3144920-3144982)
chr8 (156-231)||(3159501-3159576)
chr8 (141-226)||(4416030-4416116)
chr8 (194-231)||(2890311-2890348)
chr8 (193-229)||(3494363-3494399)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 119 - 302
Target Start/End: Original strand, 39188232 - 39188415
Alignment:
Q  119 catggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188232 catggaccataggcccaagtgtagtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagc 39188331  T
Q  219 tcttgcatattcacgacgtcagtgcaatgattcccctttttctttcttcttatgagcagcttctatcttctctttattgttcat 302  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39188332 tcttgcatattcacgacgtcggtgcaatgattcccctttttctttcttcttatgagcagcttctcacttctctttattgttcat 39188415  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 2875793 - 2875868
Alignment:
Q  156 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 231  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2875793 tgtagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 2875868  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 2795937 - 2795862
Alignment:
Q  156 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 231  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  2795937 tgtagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattca 2795862  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 3144982 - 3144920
Alignment:
Q  169 ggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 231  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  3144982 ggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 3144920  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 3159576 - 3159501
Alignment:
Q  156 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 231  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||| |||||| || ||||||||||||||||||    
T  3159576 tgtagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattca 3159501  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 4416116 - 4416030
Alignment:
Q  141 agtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaa-cttggttaccttctcaaatcttttagaagctcttgcat 226  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| ||  |||||||||  ||||||||||||||| |||||||    
T  4416116 agtgtcctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagcccttgcat 4416030  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 2890311 - 2890348
Alignment:
Q  194 ttaccttctcaaatcttttagaagctcttgcatattca 231  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2890311 ttaccttctgaaatcttttagaagctcttgcatattca 2890348  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 3494363 - 3494399
Alignment:
Q  193 gttaccttctcaaatcttttagaagctcttgcatatt 229  Q
    |||||||||||| |||||||||||||| |||||||||    
T  3494363 gttaccttctcatatcttttagaagcttttgcatatt 3494399  T

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