View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_high_17 (Length: 208)
Name: NF17835_high_17
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_high_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29009543 - 29009481
Alignment:
| Q |
1 |
actctccataacagaaaacgaaaccaaaattctcatcactctgtataaaggcgcgaaaaccct |
63 |
Q |
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| T |
29009543 |
actctccgtaacagaaaacgaaaccaaaattctcatcactctgtataaaggcgcgaaaaccct |
29009481 |
T |
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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 32232546 - 32232493
Alignment:
| Q |
155 |
cacaaaatttgaggttgtattttcttcgttgcactcactacatatagtcaagta |
208 |
Q |
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| T |
32232546 |
cacaaaatttgaggttgtattttcttcgttgcactcactacatatagtcaagta |
32232493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 32220065 - 32220013
Alignment:
| Q |
155 |
cacaaaatttgaggttgtattttcttcgttgcactcactacatatagtcaagta |
208 |
Q |
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| T |
32220065 |
cacaaaatttgaggttgta-tttcttcattacactcaccgcatatagtcaagta |
32220013 |
T |
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