View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_high_6 (Length: 412)
Name: NF17835_high_6
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_high_6 |
 | |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 24495053 - 24495421
Alignment:
| Q |
1 |
cgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24495053 |
cgggttcaacatgtttccactatagatcatctatcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
24495152 |
T |
|
| Q |
101 |
ctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495153 |
ctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagtta |
24495252 |
T |
|
| Q |
201 |
ttctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24495253 |
atctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatata |
24495352 |
T |
|
| Q |
301 |
ttgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24495353 |
ttgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24495421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 129 - 369
Target Start/End: Original strand, 24491623 - 24491863
Alignment:
| Q |
129 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24491623 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24491722 |
T |
|
| Q |
229 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491723 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
24491822 |
T |
|
| Q |
329 |
agcaaaaaatcattattccttacatatcattattccttata |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491823 |
agcaaaaaatcattattccttacatatcattattccttata |
24491863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 321
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
176 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
275 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
276 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
321 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 2810031 - 2810071
Alignment:
| Q |
128 |
gtgttaaggttacaggaccaaggcttttaaattaagagata |
168 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2810031 |
gtgttaaggttacaagaccaaggcttttaaattaagagata |
2810071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 18556939 - 18556573
Alignment:
| Q |
1 |
cgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18556939 |
cgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
18556840 |
T |
|
| Q |
101 |
ctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |
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|
| T |
18556839 |
atgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagata-ttctagtattaagcatttaagatgagagtta |
18556741 |
T |
|
| Q |
201 |
ttctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18556740 |
ttctgtgatcaagaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaaatatgtttctatata |
18556641 |
T |
|
| Q |
301 |
ttgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
369 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18556640 |
ttgtaccaatataccttgtgaatgatatagc-aaaaatcattattccatacatatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 129 - 369
Target Start/End: Original strand, 24358936 - 24359176
Alignment:
| Q |
129 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24358936 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact |
24359035 |
T |
|
| Q |
229 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24359036 |
gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatat |
24359135 |
T |
|
| Q |
329 |
agcaaaaaatcattattccttacatatcattattccttata |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24359136 |
agcaaaaaatcattattccttacatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 144 - 370
Target Start/End: Original strand, 86693 - 86922
Alignment:
| Q |
144 |
accaaggcttttaaattaagagatactag----tattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
239 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86693 |
accaaggcttttaaattaagtgatattatattctagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta |
86792 |
T |
|
| Q |
240 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
86793 |
gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatc |
86891 |
T |
|
| Q |
340 |
attattccttacatatcattattccttatac |
370 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
86892 |
attattccttatatatcattattccttatac |
86922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 86518 - 86677
Alignment:
| Q |
1 |
cgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86518 |
cgggttcaacatgtttccactacagatcagctaacagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtat |
86617 |
T |
|
| Q |
101 |
ctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaatt |
160 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86618 |
ctgacggtacccctatcttgcaggggcgtgttaaggttacaggaccaaggcttttaaatt |
86677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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