View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_low_1 (Length: 737)
Name: NF17835_low_1
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 1e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 151 - 313
Target Start/End: Original strand, 42708768 - 42708929
Alignment:
| Q |
151 |
gataagagaatgtatctgaagtgaatgtaactcgtttattacaaagcgactacaaaaaagagtcatcattattccaatagggttgcatgcaatgccttct |
250 |
Q |
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| T |
42708768 |
gataagagaatgtatctgaagtgaatgtaactcgtttattacaaagcgactacaaaa-agagtcatcattattccaatagcgttgcatgcaatgccttct |
42708866 |
T |
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| Q |
251 |
gtgtttgctctgtttttcccccacactacactgtatagtcctacaataacatgaacccaccta |
313 |
Q |
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| T |
42708867 |
gtgtttgctctgttttttccccacactacactgtacagtcctacaataacatgaacccaccta |
42708929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 560 - 722
Target Start/End: Original strand, 42709043 - 42709205
Alignment:
| Q |
560 |
agatagatgtttcgaaatttattaattaatcagtagatagaattaccttccaagataagagaattatagaggagaagattgctataatgagagagaaaca |
659 |
Q |
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| T |
42709043 |
agatagatgtttcgaaatttattaattaatcagtagatagaattaccttccaaggtaagagaattatagaggagaagattgtaataatcagaaagaaaca |
42709142 |
T |
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| Q |
660 |
caggtcctttcttctctataacccatgtcattaagtaaaatgcgacccctgtggctataaatt |
722 |
Q |
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| T |
42709143 |
cagatcctttcttctctataacccatgtcattaagtaaagtgcgacccctgtggctataaatt |
42709205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 42708623 - 42708738
Alignment:
| Q |
17 |
atgaaatatcctaatctttattattgtcgtaagatataataaagataaaagaaaaattggttattacaaagcgatacttaattcaagagaaagaaaaatt |
116 |
Q |
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| T |
42708623 |
atgaaatatcctaatctttattattgtcgtaagatataataaagataaaagaaaaattggttattacaaagtgatacttaattcaagagaaagaaaaatt |
42708722 |
T |
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| Q |
117 |
caagataagatttgtc |
132 |
Q |
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| T |
42708723 |
caagataagatttgtc |
42708738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 43623986 - 43623898
Alignment:
| Q |
278 |
acactgtatagtcctacaa-taacatgaacccacctaaaatgctgtaaaaacacaaaaaacatgcaatcaccgagttaaattgttaatt |
365 |
Q |
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| T |
43623986 |
acactgtatagtcctactactaacatgaacccacctaaaatgctgaaaaaacaccaaaaacatgcaatcaccgagttaaattggtaatt |
43623898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 653 - 711
Target Start/End: Complemental strand, 43623603 - 43623545
Alignment:
| Q |
653 |
agaaacacaggtcctttcttctctataacccatgtcattaagtaaaatgcgacccctgt |
711 |
Q |
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| T |
43623603 |
agaaacacaggccctttcttctctatgacccatgtcattaagtaatatccgacccctgt |
43623545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 22210316 - 22210381
Alignment:
| Q |
151 |
gataagagaatgtatctgaagtgaatgtaactcgtttattacaaagcgactacaaaaaagagtcatc |
217 |
Q |
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| T |
22210316 |
gataagagaatgtaactgaagtcaatgtaactcgtttattacaaagcgactac-aaaaagagtcatc |
22210381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 22210280 - 22210322
Alignment:
| Q |
84 |
aaagcgatacttaattcaagagaaagaaaaattcaagataaga |
126 |
Q |
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| T |
22210280 |
aaagcgatacttaattcaagagaaagaaaaattcaagataaga |
22210322 |
T |
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