View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_low_12 (Length: 300)
Name: NF17835_low_12
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 9678483 - 9678629
Alignment:
| Q |
143 |
actactattttgattcatatgatgtaagctttcattttgttacacattttcttatataattctattacatcttccatcaaaaatcacattcacaaactta |
242 |
Q |
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| T |
9678483 |
actactatttggattcatatgatgtaagctttcattttgttacacattttcttatataattctattacatcttccatcataaatcacattcacaaactta |
9678582 |
T |
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| Q |
243 |
ttattcaat-------ttacttctaatacattgtctcatctaaactt |
282 |
Q |
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| T |
9678583 |
ttattcaatatacttctaacttctaatacattgtctcatctaaactt |
9678629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 9678353 - 9678456
Alignment:
| Q |
43 |
cacctttaaattcctcactttactctctttgtcacaaccagaagaagaagaaaacaaataggttgaagaacttcaagtacaagagttatggaaccatatc |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9678353 |
cacctttaaattcctcactttactctctttgtcacaaccagaagaagaagaaaacaaataggttgaagaacttcaagtacaagagttatggaaccatatc |
9678452 |
T |
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| Q |
143 |
acta |
146 |
Q |
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|||| |
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| T |
9678453 |
acta |
9678456 |
T |
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