View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_low_15 (Length: 255)
Name: NF17835_low_15
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 1374004 - 1373787
Alignment:
| Q |
19 |
aaaccgcagttcaacagcaattgagggcacatcggccacaaacaaattaacaatcaaaactcaaaagggttttaaatacaaatttgtgactgtggccttg |
118 |
Q |
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| T |
1374004 |
aaaccgcagttcgacagcaattgaggccacatcggccacacacaaattaa--------------aagggttttaaatacaaatttgtgactgtgaccttg |
1373919 |
T |
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| Q |
119 |
gccacgacaaaacaacgattatatatattgagaagatattgcaagtaata-----cctcggtctcaaattccaagcaagcaacccatcccttccttataa |
213 |
Q |
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| T |
1373918 |
gccgtgacaaaacaacgattataaatattgagaagatattgcaagtaatattagacctcggtctcaaattccaagcaagcaacccatcccttccttataa |
1373819 |
T |
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| Q |
214 |
ggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1373818 |
ggtattcaacttctttcgccaattgttctctg |
1373787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 1350571 - 1350494
Alignment:
| Q |
168 |
acctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1350571 |
acctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1350494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 1384225 - 1384148
Alignment:
| Q |
168 |
acctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1384225 |
acctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1384148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 1390330 - 1390253
Alignment:
| Q |
168 |
acctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1390330 |
acctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1390253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 1394576 - 1394499
Alignment:
| Q |
168 |
acctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1394576 |
acctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1394499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 1358477 - 1358400
Alignment:
| Q |
168 |
acctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
245 |
Q |
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| T |
1358477 |
acctcggtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttggccaattgttctctg |
1358400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 7009872 - 7009807
Alignment:
| Q |
176 |
ctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
241 |
Q |
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| T |
7009872 |
ctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
7009807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 7006778 - 7006716
Alignment:
| Q |
176 |
ctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattg |
238 |
Q |
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| T |
7006778 |
ctcaaattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattg |
7006716 |
T |
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