View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_low_2 (Length: 532)
Name: NF17835_low_2
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 8521238 - 8521590
Alignment:
| Q |
12 |
agattattctaacaagcatcattcattttttgctcatccattacgaatactgacttttttgaatctttcaacattacattggctaaaaagttgtggttgt |
111 |
Q |
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| T |
8521238 |
agatcattctaacaagcatcattcatttttggttcatccattacgaataccgacttttttgaatctttcaacgttacattggctaaaaagctgtggttgt |
8521337 |
T |
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| Q |
112 |
acatgtagattgacttcaaagtcattgttatcatattataggagcattgattggtttgttattttttctagctgagtggtttgatatttcatctcacaaa |
211 |
Q |
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| T |
8521338 |
acatgtagattgactttaaagtcattgttatcgtattataggagcatcgattggtttgttattttttctagctgagtggtttgatatttcatctcacaaa |
8521437 |
T |
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| Q |
212 |
ttcttccacatcatatctttacttattttatgaggctta------taaatttttatgag-nnnnnnnnccctagctcatattgattggtctaatttttcc |
304 |
Q |
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| T |
8521438 |
ttcttccacatcatatctttacttattttatgaggcttataaatttaaatttttatgagtttttttttccctagctc--attgattggtctaatttttcc |
8521535 |
T |
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| Q |
305 |
ctagctgattggtttgatttttcatctcacaatttcttccacttcatattgttac |
359 |
Q |
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| T |
8521536 |
ctagctgattggtttgattttttatctcacaatttcttccacttcatattgttac |
8521590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 8511655 - 8511879
Alignment:
| Q |
17 |
attctaacaagcatcattcattttttgctcatccattacga-atactgacttttttgaatctttcaacattacattggctaaaaagttgtggttgtacat |
115 |
Q |
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| T |
8511655 |
attctaatatgcttcattcattttttgctcatccattacattataatgatttcttt-aatctttcaacattacattggctaaaaagttgtggtcgtacat |
8511753 |
T |
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| Q |
116 |
gtagattgacttcaaagtcattgttatcatattataggagcattgattggtttgttattttttctagctgagtggtttgatatttcatctcacaaattct |
215 |
Q |
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| T |
8511754 |
gtacattgacttgaaagtcattgttatcgtattataggagcattgattgatttcctatttttactacctgattggttttatttttcatctcacaaatt-t |
8511852 |
T |
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| Q |
216 |
tccacatcatatctttacttattttat |
242 |
Q |
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| T |
8511853 |
ttcacatcatatctatacttattttat |
8511879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 394 - 514
Target Start/End: Original strand, 8521625 - 8521741
Alignment:
| Q |
394 |
gtgaagtccaattttaatctctcaaaataatcgtaaaacttaatttaatccctnnnnnnnnttatgcaatttagtatcagagaaattaattaagtgtgtt |
493 |
Q |
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| T |
8521625 |
gtgaagtccaattttaatctctcaaaataatcgtaaaacttaatttaatccctaaaaaaaattatgcaatttagtatcagaga----aattaagtgtgtt |
8521720 |
T |
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| Q |
494 |
cctttcgtttctcctcttgat |
514 |
Q |
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| T |
8521721 |
cctttcgtttctcctcctgat |
8521741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 8518670 - 8518727
Alignment:
| Q |
304 |
cctagctgattggtttgatttttcatctcacaatttcttccacttcatattgttactt |
361 |
Q |
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| T |
8518670 |
cctaactgattggtttgatttatcatctcacaatttcttccccttcatattgttactt |
8518727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 8530169 - 8530231
Alignment:
| Q |
299 |
ttttccctagctgattggtttgatttttcatctcacaatttcttccacttcatattgttactt |
361 |
Q |
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| T |
8530169 |
tttttcctaactgattggttttatttttcatctcacaatttcttccccttcgtatagttactt |
8530231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 12251036 - 12251163
Alignment:
| Q |
75 |
tctttcaacattacattggctaaaaagttgtggttgtacatgtagattgacttcaaagtcattgttatcatattataggagcattgattggtttgttatt |
174 |
Q |
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| T |
12251036 |
tctttgaacatgacattggctaaaaagttgtggttgtacatgtacaatgactttaaaatcattgttatcgtattata-gagcattgattggtttgat-tt |
12251133 |
T |
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| Q |
175 |
ttttctagctgagtggtttgatatttcatc |
204 |
Q |
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| T |
12251134 |
tttcctagctaattagtttgatttttcatc |
12251163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 32673311 - 32673251
Alignment:
| Q |
57 |
aatactgacttttttgaatctttcaacattacattggctaaaaagttgtggttgtacatgt |
117 |
Q |
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| T |
32673311 |
aataatgacttttatgattcttttgacattacattaactaaaaaattgtggttgtacatgt |
32673251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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