View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17835_low_5 (Length: 424)

Name: NF17835_low_5
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17835_low_5
NF17835_low_5
[»] chr6 (2 HSPs)
chr6 (19-234)||(14087691-14087904)
chr6 (19-234)||(14092223-14092436)
[»] chr2 (2 HSPs)
chr2 (19-234)||(33681735-33681945)
chr2 (19-234)||(33698792-33699002)
[»] chr8 (3 HSPs)
chr8 (19-234)||(24876452-24876664)
chr8 (45-234)||(24880954-24881140)
chr8 (131-234)||(24886289-24886392)
[»] chr1 (2 HSPs)
chr1 (19-234)||(46454050-46454263)
chr1 (22-234)||(46461454-46461663)
[»] chr5 (2 HSPs)
chr5 (235-417)||(15047539-15047721)
chr5 (85-202)||(9360905-9361021)
[»] chr7 (4 HSPs)
chr7 (19-234)||(9955251-9955463)
chr7 (19-175)||(9950263-9950416)
chr7 (22-210)||(32213508-32213697)
chr7 (88-197)||(32213273-32213385)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 14087904 - 14087691
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087904 acattactataaaatgtttaggagttttgtaatttaga--tatcacaataaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 14087807  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087806 cttcttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 14087707  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  14087706 ccgctgctactcaaca 14087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 14092436 - 14092223
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14092436 acattattataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttatttattagaagttcatcttt 14092339  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14092338 ctttttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 14092239  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  14092238 ccgctgctactcaaca 14092223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 33681735 - 33681945
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33681735 acattactataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 33681832  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  33681833 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttca---tattattagaagtctatatttt 33681929  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  33681930 ccgctgctactcaaca 33681945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 33698792 - 33699002
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698792 acattactataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 33698889  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  33698890 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttca---tattattagaagtctatatttt 33698986  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  33698987 ccgctgctactcaaca 33699002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 24876664 - 24876452
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24876664 acattactataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaaatagagtgtaacaaagtgaatttattaattagaagttcatcttt 24876567  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24876566 cttcttagacattttt-catacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctgtatttt 24876468  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  24876467 ccgctgctactcaaca 24876452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 24881140 - 24880954
Alignment:
Q  45 ttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatctttcttcttagacattttttcatacaaat 144  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24881140 ttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatctttcttcttagacattttt-catacaaat 24881044  T
Q  145 ttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactcaaca 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24881043 ttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttacgctgctactcaaca 24880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 24886392 - 24886289
Alignment:
Q  131 tttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24886392 tttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctgtattttccgctgctactc 24886293  T
Q  231 aaca 234  Q
    ||||    
T  24886292 aaca 24886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 46454050 - 46454263
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46454050 acattattataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttatttattagaagttcatcttt 46454147  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46454148 ctttttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 46454247  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  46454248 ccgctgctactcaaca 46454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 46461454 - 46461663
Alignment:
Q  22 ttactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatctttctt 121  Q
    ||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46461454 ttactataaaatgttaaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatctttctt 46461551  T
Q  122 cttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccg 221  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46461552 cttacacatttt-tcatacaaatttattgttctagctacattcatgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccg 46461650  T
Q  222 ctgctactcaaca 234  Q
    ||||| |||||||    
T  46461651 ctgctgctcaaca 46461663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 235 - 417
Target Start/End: Complemental strand, 15047721 - 15047539
Alignment:
Q  235 cactctgaaggagcatagcccttgcagggaatccatcaatttcctgagtttctgttcaaatacattcaataatatactctacacctttctccaatatcta 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15047721 cactctgaaggagcatagcccttgcagggaatccatcaatttcctgagtttctgttcaaatacattcaataatatactctacacctttctccaatatcta 15047622  T
Q  335 ttctactttgtattgctatttctctgtttccaagaaaaatgttacttgtatagaagtgctcaactgactaattattcatctca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15047621 ttctactttgtattgctatttctctgtttccaagaaaaatgttacttgtatagaagtgctcaactgactaattattcatctca 15047539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 9361021 - 9360905
Alignment:
Q  85 acaaagtgaatttattaattagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9361021 acaaagtgaatttattaattagaagttcatctttcttcttagacattttt-catacaaatttattgttctagctacattcatgttcaactttagtgagtg 9360923  T
Q  185 catagttcatattattat 202  Q
    ||||||||||||||||||    
T  9360922 catagttcatattattat 9360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 9955251 - 9955463
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9955251 acattactataaaatgtttaggagttttgtaatttaga--tatcacaaaaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcaccttt 9955348  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatatttt 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  9955349 cttcttagacatttt-tcatacaaatttattgttctagctacattcgtgttcaactttaatgagtacatagttcatattattattagaagtctatatttt 9955447  T
Q  219 ccgctgctactcaaca 234  Q
    ||||||||||||||||    
T  9955448 ccgctgctactcaaca 9955463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 9950263 - 9950416
Alignment:
Q  19 acattactataaaatgtttaggagttttgtaatttagacatatcacaacaaaacaagtagagtgtaacaaagtgaatttattaattagaagttcatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9950263 acattactataaaatgtttaggagttttgtaatttaga--tatcacaacaaaacaagtagagtgtaacatagtgaatttattaattagaagttcatcttt 9950360  T
Q  119 cttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactt 175  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9950361 cttcttagaca-tttttcatacaaatttattgttctaactacattcgtgttcaactt 9950416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 32213697 - 32213508
Alignment:
Q  22 ttactataaaatgtttaggagttttgtaatttagacatatcacaacaaaa-caagtagagtgtaacaaagtgaatttattaattagaagttcatctttct 120  Q
    ||||||||||||||| || ||||||||| ||||||  ||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  32213697 ttactataaaatgttcagaagttttgtattttaga--tatcacaacaaaaacaaatagagtgtaacaa-gtgagtttattaattagaagtttatctttct 32213601  T
Q  121 tcttagacattttttcatacaaatttattgttctagcta----cattcgtgttcaactttagtgagtgcatagttcatattattattagaagtc 210  Q
    |||||||||| ||||||||||| ||||||||||||||||      |||||||||| ||||||| |||||||| ||||||| |||||||||||||    
T  32213600 tcttagacat-ttttcatacaagtttattgttctagctaagttatttcgtgttcagctttagtaagtgcatatttcatatcattattagaagtc 32213508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 32213273 - 32213385
Alignment:
Q  88 aagtgaatttattaattagaagttcatctttcttcttagacattttttcatacaaatttattgttctagcta----cattcgtgttcaactttagtgagt 183  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||      ||||||||||||||||||||||    
T  32213273 aagtgagtttattaattagaagttcatttttcttcttagaca-tttttcatacaagtttattgttctagctatgttatttcgtgttcaactttagtgagt 32213371  T
Q  184 gcatagttcatatt 197  Q
    ||||| ||||||||    
T  32213372 gcatatttcatatt 32213385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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