View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17835_low_9 (Length: 336)
Name: NF17835_low_9
Description: NF17835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17835_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 42083512 - 42083819
Alignment:
| Q |
14 |
catcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaacaccattgctcatgcacttttccaatcctttaaaaac |
113 |
Q |
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| T |
42083512 |
catcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaacaccattgctcatgcaattttccaatcctttaaaaac |
42083611 |
T |
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| Q |
114 |
cccagtataatgaattcttctggaagtgcttcttctttgattttattctcaaatttgtatccactacttgggtccatgggttcaaaatgtatggtttatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083612 |
cccagtataatgaattcttctggaagtgcttcttctttgattttattctcaaatttgtatccactacttgggtccatgggttcaaaatgtatggtttatt |
42083711 |
T |
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| Q |
214 |
gaacacatacctcacttctgtgacttcagaaatgctttccctatagtttgcttggggagcaccaacattagcttctacctgcattaacaaacattagata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083712 |
gaacacatacctcacttctgtgacttcagaaatgctttccctatagtttgcttggggagcaccaacattagcttctacctgcattaacaaacattagata |
42083811 |
T |
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| Q |
314 |
tgtgatct |
321 |
Q |
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|||||||| |
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| T |
42083812 |
tgtgatct |
42083819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 42087029 - 42087209
Alignment:
| Q |
14 |
catcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaacaccattgctcatgcacttttccaatcctttaaaaac |
113 |
Q |
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|||||||||||| || ||||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
42087029 |
catcatggtaagaaccatccacaagtactgcacgtacatcgacaactggaaatccggccagaacaccattgctcatacactcttccaatcctttaacaac |
42087128 |
T |
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| Q |
114 |
cccagtataatgaattcttctggaagtgcttcttctttgattttattctcaaatttgtatccactacttgggtccatgggttc |
196 |
Q |
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| T |
42087129 |
cccag--gaatgtattcttttggaactgctcctcctttgatttcactcttgaattcatatccactacctggctccattggttc |
42087209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 42087289 - 42087350
Alignment:
| Q |
242 |
gaaatgctttccctatagtttgcttggggagcaccaacattagcttctacctgcattaacaa |
303 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42087289 |
gaaatgctttccctgtagtttacttggggagcaccaacattagcttcaacctgcataaacaa |
42087350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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