View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_1 (Length: 651)
Name: NF17836_high_1
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 54266437 - 54267092
Alignment:
| Q |
1 |
cacagaattttgaagagaagacaagagagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266437 |
cacagaattttgaagagaagacaagagagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattc |
54266536 |
T |
|
| Q |
101 |
tgccagcacaaatttttctaaccccattccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattatttannnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54266537 |
tgccagcacaaatttttctaaccccattccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattttttttatttt |
54266636 |
T |
|
| Q |
201 |
nnnnnnnacctttcaaattaatgcaccattaatactatatataaatatacatctttgctagcttgtttcttcattatacacttcttttttattccaatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
54266637 |
tatttttacctttcaaattaatgcaccattaatactatatataaatatacatctttgctagcttgtttcttcagtatacacttctttttttttccaatgg |
54266736 |
T |
|
| Q |
301 |
cgaaaagatcgcagaagcaaatagagaaagacgacaatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggac |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54266737 |
cgaaaaaatcgcagaagcaaatagagaaagacgacaatgcaagcaatgataatgataatctgaatccaagtaacactgtcaccaccaaagcaaaacggac |
54266836 |
T |
|
| Q |
401 |
gaggaaaagtgtccctagaacttctccacctcaacgcagctcaatatacagaggagtcactaggtgatttgctcgatcatatcgccttgattgtttattt |
500 |
Q |
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|
| T |
54266837 |
gaggaaaagtgtccctagaacttctccacctcaacgcagctcaatatacagaggagtcactaggtgatttgctcgatcatatcgccttgattgtttattt |
54266936 |
T |
|
| Q |
501 |
cctcttgtatatgtttatctatctctcgtgtcggattagcatttgacacactaacatttgttatt-----------nnnnnnnnntgttaccatcggtca |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
54266937 |
cctcttgtatatgtttatctatctctcgtgtcggattagcatttaacacactaacatttgttattaaaaaaaataaaaaaaaaaatgttaccatcggtca |
54267036 |
T |
|
| Q |
590 |
ggcaccgttggacaggccgatatgaagctcatttgtgggacaagaattgttggaat |
645 |
Q |
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| T |
54267037 |
ggcaccgttggacaggccgatatgaagctcatttgtgggacaagaattgttggaat |
54267092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 595 - 645
Target Start/End: Original strand, 1228988 - 1229038
Alignment:
| Q |
595 |
cgttggacaggccgatatgaagctcatttgtgggacaagaattgttggaat |
645 |
Q |
| |
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|||||||| || ||||||||||||||||||||||| |||||||| |||||| |
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| T |
1228988 |
cgttggaccggtcgatatgaagctcatttgtgggataagaattgctggaat |
1229038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 598 - 645
Target Start/End: Original strand, 25049778 - 25049825
Alignment:
| Q |
598 |
tggacaggccgatatgaagctcatttgtgggacaagaattgttggaat |
645 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25049778 |
tggacaggccggtatgaagctcatttgtgggacaagaattgttggaat |
25049825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 25049621 - 25049684
Alignment:
| Q |
402 |
aggaaaagtgtccctagaacttctccacctcaacgcagctcaatatacagaggagtcactaggt |
465 |
Q |
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|||| ||||||||| ||| ||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
25049621 |
aggagaagtgtcccaagagattctccaattcaacgtagctcaatatatagaggagtcactaggt |
25049684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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