View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_11 (Length: 488)
Name: NF17836_high_11
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 354314 - 353996
Alignment:
| Q |
22 |
gaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttgaagaatccat |
121 |
Q |
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| T |
354314 |
gaccagacattacaaacacacacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattgaagaatccat |
354215 |
T |
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| Q |
122 |
aacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtc |
221 |
Q |
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| T |
354214 |
aacactgctccagcaatgatcacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatttcacttgtc |
354115 |
T |
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| Q |
222 |
tccttcccttcaaccttcaacagatcagacataaccaactgcgggtccgagtttctgagtcttttgatcaagcttctttgttatagtggcaaacttaacc |
321 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
354114 |
tccttcccttcaaccttcaatagatcagacataaccaactgcgggtccgagtttctgagtcttctgatcaagcttctttgttatagtggcaaacttaacc |
354015 |
T |
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| Q |
322 |
ttcaaaaacaaacatcaca |
340 |
Q |
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| T |
354014 |
ttcaaaaacaaacatcaca |
353996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
| Q |
96 |
catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa |
146 |
Q |
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| T |
10580662 |
catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa |
10580612 |
T |
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