View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17836_high_14 (Length: 475)
Name: NF17836_high_14
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 30638271 - 30638529
Alignment:
| Q |
13 |
aatatagaaattgcattaaggtacttgaacgccttctttacaactttacaagggtccatacctggacgactttcctaagattccaacaacaaatgcaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30638271 |
aatatagaaattgcattaaggtacttgaacgccttctttacaactttacaagggtccataattggacaactttcctaagattccaacaacaaatgcaact |
30638370 |
T |
|
| Q |
113 |
ttcggccttatacataattgagcatacatatgatttccaacaacataagcatatgtaatgttctttattttttcccgatccaaataatttttaggaaatt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638371 |
ttcggccttatacatgattgagcatacatatgatttccaacaacataagcatatgtaatgttctttattttttcccgatccaaataatttttaggaaatt |
30638470 |
T |
|
| Q |
213 |
tgttcaaattaaacctatcacacttcaatatgggagaaacacttggtcaacaatttttc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638471 |
tgttcaaattaaacctatcacacttcaatatgggagaaacacttggtcaacaatttttc |
30638529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 306 - 453
Target Start/End: Original strand, 30638526 - 30638673
Alignment:
| Q |
306 |
tttcttgtgatacacctaaaattcctggaagtttatctcgatggatcttaatgagaatcacataagatgtctcacacatatccttcgtatcaaagttatt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30638526 |
tttcttgtgatacacctaaaattcctggaagtttatctcgatggatcttaatgagaatcacataagatgtctcacacatatcctttgtatcaaagttatt |
30638625 |
T |
|
| Q |
406 |
agagaggaattatttcgcctcatgtagaaaacccttgtcattggttgc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638626 |
agagaggaattatttcgcctcatgtagaaaacccttgtcattggttgc |
30638673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 19077999 - 19077899
Alignment:
| Q |
350 |
atcttaatgagaatcacataagatgtctcacacatatccttcgtatcaaagttattagagaggaattatttcgcctcatgtagaaaacccttgtcattgg |
449 |
Q |
| |
|
||||||||| ||| |||||||| | ||||||||||||||| |||||| |||||||||| |||| |||| | |||| |||||||| || ||||||| |
|
|
| T |
19077999 |
atcttaatgtcaatgacataagaagcgtcacacatatccttcacatcaaaactattagagagaaattgtttcacatcatatagaaaacttttatcattgg |
19077900 |
T |
|
| Q |
450 |
t |
450 |
Q |
| |
|
| |
|
|
| T |
19077899 |
t |
19077899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University