View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_2 (Length: 629)
Name: NF17836_high_2
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 14 - 629
Target Start/End: Complemental strand, 47826977 - 47826367
Alignment:
| Q |
14 |
aaattagcatgaactaacaaactaaaacataaagttagcattaaatcaataagtaatatactctgaactattactagtattattgtgtaaatggttaaca |
113 |
Q |
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| T |
47826977 |
aaattagcatgaactaacaaactaaaacataaagttagcattaaatcaataagtaatatactctgaactattactggtattattgtgtaaatggttaaca |
47826878 |
T |
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| Q |
114 |
taatgttagctcactgagtattttgatagtttattagggaccagatagatataagagaaaatgataattttaaatgtttagtcctagcatataataataa |
213 |
Q |
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| T |
47826877 |
taatgttagctcactgagtattttgatagtttattagggaccagata----taagagaaaatgataattttaaatgtttagtcctagcatataataataa |
47826782 |
T |
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| Q |
214 |
ctttggtgaagaagnnnnnnnnnt---tgacatactatccttttgtgtcccccgtacgggacatcttaatagtttcattttttcaatctctatctatata |
310 |
Q |
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| T |
47826781 |
ctttggtgaagaaaaaaaaaaaaaaagtgacatactatccttttgtgtcccccgtacgggacatcttaatagtttcattttttcaatctctatctatata |
47826682 |
T |
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| Q |
311 |
tgtacttgtagcagcatggattcattataaatatacttgagttataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcc |
410 |
Q |
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| T |
47826681 |
tatacttgtagcagcatggagtcattataaatatacttgagttataataataaacaaactaatttacctgattctccgcaagtcccatctgaatgattcc |
47826582 |
T |
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| Q |
411 |
cgtgggattatgaattgggtgatagggattcttctcgtactcttgccatcctaggaagtaagaagagtcttggccatgagagtcttcactagccttccta |
510 |
Q |
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| T |
47826581 |
cgtgggattatgaattgggtgatagggattcttctcgtactcttgccatcctaggaagtaagaagagtcttggccatgagagtcttcactagccttccta |
47826482 |
T |
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| Q |
511 |
gacaacatgttttctaattaatgtataataccaaatacaaacaaatttgcacaatgattaaatcaaattgtgtaagcaattgaactcgagaaatcaaaga |
610 |
Q |
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| T |
47826481 |
gacaacatgttttctaattaatgtattataccaaata----caaatttgcacaatgattaaatcaaattgtgtaagcaattgaactcgagaaatcaaaga |
47826386 |
T |
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| Q |
611 |
gtgaaattaagacagggtt |
629 |
Q |
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| T |
47826385 |
gtgaaattaagacagggtt |
47826367 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 40207099 - 40207046
Alignment:
| Q |
436 |
ggattcttctcgtactcttgccatcctaggaagtaagaagagtcttggccatga |
489 |
Q |
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| T |
40207099 |
ggatttttctcgtattcttcccatcctaagaagtatgaggagtcttggccatga |
40207046 |
T |
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