View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_high_20 (Length: 410)

Name: NF17836_high_20
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_high_20
NF17836_high_20
[»] chr4 (33 HSPs)
chr4 (20-410)||(18019957-18020347)
chr4 (20-93)||(30207583-30207655)
chr4 (108-179)||(7367967-7368038)
chr4 (51-122)||(32799723-32799794)
chr4 (37-103)||(11264303-11264369)
chr4 (21-98)||(8468935-8469011)
chr4 (37-90)||(11158372-11158425)
chr4 (54-103)||(29467626-29467675)
chr4 (37-93)||(6466058-6466114)
chr4 (37-93)||(6978974-6979030)
chr4 (37-89)||(7694026-7694078)
chr4 (109-161)||(22236036-22236088)
chr4 (37-93)||(24370965-24371021)
chr4 (37-89)||(24929495-24929547)
chr4 (20-66)||(7368094-7368140)
chr4 (44-98)||(54325044-54325098)
chr4 (35-93)||(55084493-55084551)
chr4 (361-398)||(18020337-18020374)
chr4 (129-178)||(28615441-28615490)
chr4 (110-179)||(37636099-37636168)
chr4 (37-98)||(49219141-49219202)
chr4 (113-177)||(825404-825468)
chr4 (45-89)||(1137722-1137766)
chr4 (107-139)||(4684058-4684090)
chr4 (130-182)||(9720564-9720616)
chr4 (49-93)||(19429723-19429767)
chr4 (130-174)||(22662169-22662213)
chr4 (130-174)||(22666648-22666692)
chr4 (42-94)||(24087345-24087397)
chr4 (21-93)||(26747414-26747486)
chr4 (37-89)||(29263372-29263424)
chr4 (45-93)||(45927359-45927407)
chr4 (144-184)||(54575511-54575551)
[»] chr2 (22 HSPs)
chr2 (20-410)||(3058969-3059359)
chr2 (36-96)||(4085209-4085269)
chr2 (42-103)||(32821816-32821877)
chr2 (42-103)||(1939334-1939395)
chr2 (37-93)||(13736305-13736361)
chr2 (37-93)||(39983344-39983400)
chr2 (37-89)||(43141873-43141925)
chr2 (38-93)||(16785360-16785415)
chr2 (129-179)||(1830146-1830196)
chr2 (37-103)||(10563560-10563626)
chr2 (107-181)||(15120268-15120342)
chr2 (112-174)||(37276834-37276896)
chr2 (361-398)||(3058942-3058979)
chr2 (49-90)||(3973549-3973590)
chr2 (111-188)||(21279953-21280030)
chr2 (20-93)||(22681197-22681269)
chr2 (42-79)||(29419868-29419905)
chr2 (129-174)||(41170717-41170762)
chr2 (110-171)||(43985297-43985358)
chr2 (49-93)||(1647250-1647294)
chr2 (51-123)||(5781685-5781757)
chr2 (37-93)||(19629365-19629421)
[»] scaffold0199 (1 HSPs)
scaffold0199 (71-178)||(6859-6966)
[»] chr8 (29 HSPs)
chr8 (71-178)||(1664418-1664525)
chr8 (37-88)||(29973083-29973134)
chr8 (41-93)||(2458578-2458630)
chr8 (37-89)||(30277261-30277313)
chr8 (107-176)||(10062057-10062126)
chr8 (37-104)||(29973153-29973221)
chr8 (37-93)||(31705087-31705143)
chr8 (71-178)||(1892138-1892245)
chr8 (42-105)||(7107722-7107785)
chr8 (37-95)||(38561728-38561786)
chr8 (37-98)||(8062331-8062392)
chr8 (44-89)||(11188171-11188216)
chr8 (42-111)||(11415161-11415230)
chr8 (37-98)||(28769346-28769407)
chr8 (42-87)||(39268522-39268567)
chr8 (37-89)||(4558800-4558852)
chr8 (31-87)||(8060665-8060721)
chr8 (37-93)||(31862495-31862551)
chr8 (107-178)||(1889049-1889120)
chr8 (44-103)||(14949875-14949934)
chr8 (37-79)||(26473778-26473820)
chr8 (37-173)||(14926901-14927037)
chr8 (37-74)||(34770894-34770931)
chr8 (34-79)||(42197151-42197196)
chr8 (37-105)||(5088854-5088922)
chr8 (105-181)||(9700084-9700160)
chr8 (37-93)||(11183547-11183603)
chr8 (21-93)||(27728033-27728104)
chr8 (63-111)||(29169091-29169139)
[»] chr5 (26 HSPs)
chr5 (37-89)||(16889737-16889789)
chr5 (19-111)||(40205068-40205157)
chr5 (129-176)||(34198528-34198575)
chr5 (19-93)||(37588372-37588445)
chr5 (34-93)||(36318773-36318832)
chr5 (37-103)||(15074751-15074817)
chr5 (19-93)||(37526211-37526284)
chr5 (41-93)||(37611227-37611279)
chr5 (41-93)||(37787957-37788009)
chr5 (144-183)||(12074355-12074394)
chr5 (37-88)||(17368678-17368729)
chr5 (20-103)||(28586768-28586850)
chr5 (42-93)||(36638754-36638805)
chr5 (107-161)||(40534284-40534338)
chr5 (110-163)||(1084068-1084121)
chr5 (44-93)||(11684423-11684472)
chr5 (20-101)||(29588865-29588945)
chr5 (44-93)||(30653388-30653437)
chr5 (37-89)||(2880563-2880615)
chr5 (37-89)||(10272447-10272499)
chr5 (37-85)||(10771908-10771956)
chr5 (37-89)||(15003530-15003582)
chr5 (37-93)||(17777911-17777967)
chr5 (37-89)||(18543213-18543264)
chr5 (37-89)||(29659353-29659405)
chr5 (45-89)||(38104873-38104917)
[»] chr7 (17 HSPs)
chr7 (36-93)||(39505957-39506014)
chr7 (37-103)||(24363603-24363669)
chr7 (20-89)||(37064236-37064307)
chr7 (42-103)||(44615106-44615167)
chr7 (42-181)||(529382-529521)
chr7 (49-104)||(1710744-1710799)
chr7 (111-174)||(30535652-30535715)
chr7 (37-87)||(2825249-2825299)
chr7 (107-161)||(10079270-10079324)
chr7 (37-98)||(4966158-4966219)
chr7 (44-93)||(26935569-26935618)
chr7 (20-93)||(38010700-38010772)
chr7 (118-174)||(5010389-5010445)
chr7 (37-89)||(20553105-20553157)
chr7 (63-103)||(27496409-27496449)
chr7 (63-103)||(27503067-27503107)
chr7 (37-89)||(46104583-46104635)
[»] chr3 (22 HSPs)
chr3 (42-173)||(13709755-13709886)
chr3 (20-103)||(22214661-22214743)
chr3 (20-98)||(36646389-36646466)
chr3 (41-122)||(31403153-31403234)
chr3 (19-91)||(14548735-14548806)
chr3 (42-93)||(30923910-30923961)
chr3 (37-98)||(237399-237460)
chr3 (37-93)||(30322032-30322088)
chr3 (74-183)||(12923250-12923356)
chr3 (37-96)||(21367669-21367728)
chr3 (107-174)||(49845458-49845525)
chr3 (37-91)||(1816585-1816639)
chr3 (111-173)||(30321937-30321999)
chr3 (42-100)||(44284085-44284143)
chr3 (42-88)||(48528563-48528609)
chr3 (37-90)||(37138292-37138345)
chr3 (42-79)||(39311705-39311742)
chr3 (129-178)||(41848630-41848679)
chr3 (38-103)||(48048984-48049049)
chr3 (42-90)||(24887298-24887346)
chr3 (37-93)||(41644457-41644513)
chr3 (147-179)||(47903993-47904025)
[»] chr1 (18 HSPs)
chr1 (107-171)||(5157157-5157221)
chr1 (37-89)||(25479583-25479635)
chr1 (37-93)||(51929787-51929843)
chr1 (44-103)||(6279408-6279467)
chr1 (110-173)||(28467521-28467584)
chr1 (37-79)||(5924057-5924099)
chr1 (35-93)||(30257683-30257741)
chr1 (38-76)||(50319273-50319311)
chr1 (21-54)||(40751181-40751214)
chr1 (37-98)||(47598428-47598489)
chr1 (20-96)||(7218083-7218158)
chr1 (37-89)||(15361715-15361767)
chr1 (38-86)||(15437966-15438014)
chr1 (37-89)||(23902083-23902135)
chr1 (44-88)||(30014095-30014139)
chr1 (107-159)||(32515374-32515426)
chr1 (37-93)||(33976688-33976744)
chr1 (41-93)||(35925696-35925748)
[»] scaffold0003 (1 HSPs)
scaffold0003 (38-93)||(306329-306384)
[»] chr6 (11 HSPs)
chr6 (37-93)||(2117405-2117461)
chr6 (39-123)||(5564110-5564194)
chr6 (46-89)||(34939755-34939798)
chr6 (20-89)||(281864-281932)
chr6 (40-89)||(7931805-7931854)
chr6 (42-103)||(19275638-19275699)
chr6 (107-160)||(27857443-27857496)
chr6 (37-93)||(4420645-4420701)
chr6 (37-105)||(9732478-9732546)
chr6 (37-89)||(14492304-14492356)
chr6 (34-90)||(31686378-31686434)
[»] scaffold0200 (1 HSPs)
scaffold0200 (147-192)||(29659-29704)
[»] scaffold0159 (1 HSPs)
scaffold0159 (51-123)||(27017-27089)
[»] scaffold0020 (1 HSPs)
scaffold0020 (37-93)||(159985-160041)


Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 18019957 - 18020347
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaa 119  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18019957 gttttcatataaacttgtgagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttataagctctcccaaa 18020056  T
Q  120 cagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgggtcggacaatttgttctcttaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  18020057 cagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgtgtcggacaatttggcctcttaatt 18020156  T
Q  220 attgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgaagttgtcctggatgaactaatgttaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18020157 attgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgatgttgtcctggatgaactaatgttaa 18020256  T
Q  320 tgagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcctatgttttcaaggacc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18020257 tgagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcctatgttttcaaggacc 18020347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 30207655 - 30207583
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| || | |||||||||||||||||||   ||||||| |||||||||||| |||||||||||||    
T  30207655 gttttcatataagctat-aagttgttttcataagctaccttagagagattatggaaataagctgaaaacagctt 30207583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 7368038 - 7367967
Alignment:
Q  108 agctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 179  Q
    |||||||||||||||| ||  ||| |||||||   ||| ||||||||||||||||| |||||||||||||||    
T  7368038 agctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagaccct 7367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 32799794 - 32799723
Alignment:
Q  51 aagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacag 122  Q
    |||||||  |||||||||||| ||||||| ||||||||||||| ||||| ||| | |||||||| |||||||    
T  32799794 aagctatcatagagagtttatcgaaataagctgaaaacagcttatggatgtgtcataagctctctcaaacag 32799723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 11264303 - 11264369
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||||||||| || |||||||| ||||||||||||  ||||||||| || |||| ||||    
T  11264303 taagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgt 11264369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 8468935 - 8469011
Alignment:
Q  21 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    ||||||||||| || ||| |||||||||||||| ||| |||||||| ||||| |||||| ||||||||| ||| ||||    
T  8468935 ttttcatataagctatta-gttgttttcataagttattctagagagcttatgaaaataatctgaaaacaacttatgga 8469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 11158425 - 11158372
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 90  Q
    |||||||||||||||||||||  ||||||| || ||||||||| ||||||||||    
T  11158425 taagttgttttcataagctatcttagagagcttgtggaaataagctgaaaacag 11158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 29467675 - 29467626
Alignment:
Q  54 ctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||| ||||    
T  29467675 ctatcctagagagtttatggaaataagctgaaaacagcttatggacatgt 29467626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 6466114 - 6466058
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||| |||||||||| |||||||| ||||||||||||  |||||| |||||    
T  6466114 taagttgtttccataagctattctagagagattatggaaataagttgaaaatagctt 6466058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 6979030 - 6978974
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||| |||||| || ||| |||||||||| |||||| |||||||||||||    
T  6979030 taagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagctt 6978974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 7694078 - 7694026
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||| ||| || |||||||||||||||||| |||||||||    
T  7694078 taagctgttttcataagttatcctggagagtttatggaaataagctgaaaaca 7694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 22236088 - 22236036
Alignment:
Q  109 gctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 161  Q
    ||||||||||||||||||  ||||| ||||||| |||||| ||||||||||||    
T  22236088 gctctcccaaacagtttcgcaagtggttatgttagtaaatgaactcaaataag 22236036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 24371021 - 24370965
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||||||| ||| | ||||||| ||||||| |||||||| ||||    
T  24371021 taagttgttttcataagctatcctaaatagtttatagaaataagctgaaaacggctt 24370965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 24929495 - 24929547
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||||||||| || | |||||||| |||||||||||| |||||||||    
T  24929495 taagttgttttcataaactctactagagagcttatggaaataagctgaaaaca 24929547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 7368140 - 7368094
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagag 66  Q
    |||||||||||| ||| |||||||||| |||||||||| ||||||||    
T  7368140 gttttcatataagcttataagttgtttccataagctattctagagag 7368094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 54325098 - 54325044
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    |||||| |||||||  | ||||||||||||| |||||||||||||||||| ||||    
T  54325098 ttttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatgga 54325044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 55084551 - 55084493
Alignment:
Q  35 tttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||| ||||||  ||||||| ||||| |||||| |||||| ||||||    
T  55084551 tttaagttgttttcatgagctatcttagagagcttatgaaaataagctgaaaccagctt 55084493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 18020337 - 18020374
Alignment:
Q  361 tttcaaggactgagggaccaaattgtttgatgcctatg 398  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  18020337 tttcaaggaccgagggaccaaattgtttgacgcctatg 18020374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 28615441 - 28615490
Alignment:
Q  129 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 178  Q
    ||||||||||| | ||| ||||||| ||||||||| ||||||||||||||    
T  28615441 aagtgtttatgctagtagataaacttaaataagtcaatccaaacagaccc 28615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 37636168 - 37636099
Alignment:
Q  110 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 179  Q
    ||||||||||||||||   | ||| ||||||| ||| |||||||||||||| || ||||||| |||||||    
T  37636168 ctctcccaaacagttttacaggtgcttatgttagtagataaactcaaataaatcaatccaaatagaccct 37636099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 49219141 - 49219202
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    |||||||||||||||| ||||  || |||| |||||||||||| ||||||||| ||| ||||    
T  49219141 taagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttatgga 49219202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 825468 - 825404
Alignment:
Q  113 tcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacc 177  Q
    ||||||||||||||  || || ||||||  ||| |||| |||||||||||| |||||||||||||    
T  825468 tcccaaacagtttcacaaatgattatgtaggtatataagctcaaataagtcaatccaaacagacc 825404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 1137722 - 1137766
Alignment:
Q  45 tttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||| |||| | |||||| ||||||||||||||||||||||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaaca 1137766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 4684090 - 4684058
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatg 139  Q
    ||||||||||||||||||||| |||||||||||    
T  4684090 aagctctcccaaacagtttctcaagtgtttatg 4684058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 9720616 - 9720564
Alignment:
Q  130 agtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttag 182  Q
    |||| ||||||| ||| ||||||||||||||||| |||| |||||| ||||||    
T  9720616 agtgcttatgttagtagataaactcaaataagtcaatcccaacagatccttag 9720564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 19429723 - 19429767
Alignment:
Q  49 ataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||| || ||||| |||||||||||| |||||||||||||    
T  19429723 ataagctatcctggagagcttatggaaataagctgaaaacagctt 19429767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 22662213 - 22662169
Alignment:
Q  130 agtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    |||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  22662213 agtgcttatgttagtagataaactcaaataagtcaatccaaacag 22662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 22666692 - 22666648
Alignment:
Q  130 agtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    |||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  22666692 agtgcttatgttagtagataaactcaaataagtcaatccaaacag 22666648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 24087345 - 24087397
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttg 94  Q
    |||||||||||| ||| || || |||||||||||| |||||||||||| ||||    
T  24087345 tgttttcataagttatcctggaaagtttatggaaacaaactgaaaacaacttg 24087397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 26747486 - 26747414
Alignment:
Q  21 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||| ||| |||||||||||||| || ||| ||| |||  |||||||||||| || |||| |||||    
T  26747486 ttttcatataagcttataagttgttttcattagttatcctaaagaacttatggaaataagctaaaaaaagctt 26747414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 29263372 - 29263424
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||||||||| ||  |||| || ||||||||| |||||||||    
T  29263372 taagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaaca 29263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 45927359 - 45927407
Alignment:
Q  45 tttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||| |||||||  | |||||||||||||||||| |||||||||||||    
T  45927359 tttcagaagctattatggagagtttatggaaataagctgaaaacagctt 45927407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 54575551 - 54575511
Alignment:
Q  144 taaataaactcaaataagtcgatccaaacagacccttagtt 184  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  54575551 taaataaactcaaataagtcaatccaaacataccctaagtt 54575511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 3059359 - 3058969
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaa 119  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3059359 gttttcatataaacttgtgagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttataagctctcccaaa 3059260  T
Q  120 cagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgggtcggacaatttgttctcttaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  3059259 cagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcataaaattgtgtcggacaatttggcctcttaatt 3059160  T
Q  220 attgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgaagttgtcctggatgaactaatgttaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3059159 attgaaatctccaaagagtcattgaaattgaatgatcaagttagttcttttgggttggtcgattaagaccatgatgttgtcctggatgaactaatgttaa 3059060  T
Q  320 tgagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcctatgttttcaaggacc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3059059 tgagtatttcaattttacggattatttttggaacttgttgatttcaaggactgagggaccaaattgtttgatgcctatgttttcaaggacc 3058969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 4085269 - 4085209
Alignment:
Q  36 ttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 96  Q
    |||||||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||    
T  4085269 ttaagttgttttcataagctatcccacagagtttatggaaataaacagaaagcagcttgtg 4085209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 32821816 - 32821877
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||||||||||| |||| ||||    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgt 32821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 1939395 - 1939334
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||||||| || ||||| ||||||||||||  |||||||||||| |||| ||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgt 1939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 13736361 - 13736305
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||  ||||||||||||    
T  13736361 taagctgttttcataagctatactagagagcttatgaaaataacttgaaaacagctt 13736305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 39983344 - 39983400
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||||||| || ||||| | ||| |||||||||||||| |||||    
T  39983344 taagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagctt 39983400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 43141873 - 43141925
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  43141873 taagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaaca 43141925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 16785415 - 16785360
Alignment:
Q  38 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||| ||| ||  |||||||||||| |||| |||||||||||||    
T  16785415 aagttgttttcataagatatcctgaagagtttatggagataatctgaaaacagctt 16785360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 1830146 - 1830196
Alignment:
Q  129 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccct 179  Q
    ||||| ||||||  ||||||||||||||||||||| |||||||||| ||||    
T  1830146 aagtgcttatgtcagtaaataaactcaaataagtcaatccaaacaggccct 1830196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 10563626 - 10563560
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||||||||||  |||| ||| | |||||| ||||||| ||||| |||| ||||    
T  10563626 taagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaatagcttatggacatgt 10563560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 15120268 - 15120342
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccctta 181  Q
    |||||||||||||||| |||  || |||||||| | ||| ||||  ||||||||||| ||||||||||| |||||    
T  15120268 aagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaacagatcctta 15120342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 37276834 - 37276896
Alignment:
Q  112 ctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    |||||||||||| ||  ||||| |||| || ||| ||||||| ||||||||||||||||||||    
T  37276834 ctcccaaacagtctcacaagtgcttatattagtagataaacttaaataagtcgatccaaacag 37276896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 3058979 - 3058942
Alignment:
Q  361 tttcaaggactgagggaccaaattgtttgatgcctatg 398  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  3058979 tttcaaggaccgagggaccaaattgtttgacgcctatg 3058942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 3973549 - 3973590
Alignment:
Q  49 ataagctatgctagagagtttatggaaataaactgaaaacag 90  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  3973549 ataagctatcctagggagtttatggaaataagctgaaaacag 3973590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 21280030 - 21279953
Alignment:
Q  111 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagacccttagttcata 188  Q
    ||||||||||||| || ||||| |||||||  |   ||||||||||||||||| || |||||| ||||||| ||||||    
T  21280030 tctcccaaacagtctcgtaagtatttatgtcagccgataaactcaaataagtcaattcaaacaaacccttaattcata 21279953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 22681269 - 22681197
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| || | ||| ||||||||||| |||| |||||||  |||||||||||| || ||||||||||    
T  22681269 gttttcatataagctat-aagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctt 22681197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 29419868 - 29419905
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataa 79  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  29419868 tgttttcatatgctatcctagagagtttatggaaataa 29419905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 41170717 - 41170762
Alignment:
Q  129 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    ||||||||||||| ||| ||||||||||||||| | ||||||||||    
T  41170717 aagtgtttatgttagtagataaactcaaataagccaatccaaacag 41170762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 43985297 - 43985358
Alignment:
Q  110 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaa 171  Q
    ||||| ||||||||||   ||||||||||||  ||| ||||||| |||||||||||||||||    
T  43985297 ctctctcaaacagttttacaagtgtttatgtcagtagataaacttaaataagtcgatccaaa 43985358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 1647250 - 1647294
Alignment:
Q  49 ataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||  ||||||| |||||||||||| |||||||||||||    
T  1647250 ataagctattatagagagcttatggaaataagctgaaaacagctt 1647294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 5781685 - 5781757
Alignment:
Q  51 aagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagt 123  Q
    |||||||  ||||||| |||||||||||| |||||||||| || || | |||| | |||||||| ||||||||    
T  5781685 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataagctctcgcaaacagt 5781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 19629365 - 19629421
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||||||| || ||||||||||| ||||||  ||||| ||||||    
T  19629365 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatcagctt 19629421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 6859 - 6966
Alignment:
Q  71 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 170  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||||||||||||| ||  ||||||||||| | ||| ||||||||||||||||| ||| ||    
T  6859 tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaa 6958  T
Q  171 acagaccc 178  Q
    ||||||||    
T  6959 acagaccc 6966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 1664418 - 1664525
Alignment:
Q  71 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 170  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||||||||||||| ||  ||||||||||| | ||| ||||||||||||||||| ||| ||    
T  1664418 tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaa 1664517  T
Q  171 acagaccc 178  Q
    ||||||||    
T  1664518 acagaccc 1664525  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 29973083 - 29973134
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaac 88  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  29973083 taagttgttttcataagctatccttgagagtttatggaaataaactgaaaac 29973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 2458630 - 2458578
Alignment:
Q  41 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  2458630 ttgtttacataagctatcctagagagcttatggaaataaactgaaaacagctt 2458578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 30277313 - 30277261
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  30277313 taagctgttttcataagctatcctagagagtttatggaaataagctgaaaaca 30277261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 10062126 - 10062057
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagac 176  Q
    ||||||||||||| |||||| |||||||| ||||| ||| |||| |||||||||| | ||||||||||||    
T  10062126 aagctctcccaaatagtttcgtaagtgttgatgttagtagataagctcaaataagccaatccaaacagac 10062057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 29973153 - 29973221
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaa-cagcttgtggatatgtt 104  Q
    ||||||||||||| ||||||| || |||| ||||||||||||||||||||| |||||| |||| |||||    
T  29973153 taagttgttttcacaagctatccttgagaatttatggaaataaactgaaaaccagcttttggacatgtt 29973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 31705087 - 31705143
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||||| | || |||||||||||||||||| |||||||||||||    
T  31705087 taagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagctt 31705143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 1892245 - 1892138
Alignment:
Q  71 tggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaa 170  Q
    |||||||||||| |||||| ||  |||| |||| | ||||||| ||||||| | ||  |||||||||||   ||| ||||||||||||||||| ||| ||    
T  1892245 tggaaataaactcaaaacaactaatggacatgtcataagctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaataagtcaatctaa 1892146  T
Q  171 acagaccc 178  Q
    ||||||||    
T  1892145 acagaccc 1892138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 7107785 - 7107722
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 105  Q
    |||||||||||||||| |  |||||||||||||||||||| |||||| |||| |||| ||||||    
T  7107785 tgttttcataagctattcaggagagtttatggaaataaacagaaaaccgcttatggacatgtta 7107722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 38561728 - 38561786
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgt 95  Q
    |||||||||||||||| ||||  ||||||||| ||| |||||||| |||||||||||||    
T  38561728 taagttgttttcataaactattatagagagttcatgaaaataaacggaaaacagcttgt 38561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 8062331 - 8062392
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| ||||||||| ||| ||||    
T  8062331 taagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatgga 8062392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 11188216 - 11188171
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||    
T  11188216 ttttgataagctatcctagagagtttatggtaataaactgaaaaca 11188171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 11415161 - 11415230
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagct 111  Q
    |||||||||||||||| ||||||||||| || |||||| |||| || ||||| |||| |||||| |||||    
T  11415161 tgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagct 11415230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 28769407 - 28769346
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    |||| ||||||||||||||||  | |||||||||||||||||| ||||||||| ||| ||||    
T  28769407 taagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatgga 28769346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 39268567 - 39268522
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaa 87  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||    
T  39268567 tgttttcataagcttttctagagagcttatggaaataaactgaaaa 39268522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 4558800 - 4558852
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| ||||| |||||||||| |||||||| ||||||||||||||| ||||||    
T  4558800 taagctgtttccataagctatcctagagagcttatggaaataaactaaaaaca 4558852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 8060665 - 8060721
Alignment:
Q  31 aacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 87  Q
    ||||| |||| ||||||||||||| || |||||||| |||||||||||| |||||||    
T  8060665 aacttataagctgttttcataagcaatcctagagagcttatggaaataagctgaaaa 8060721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 31862495 - 31862551
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||| ||| |||||||| ||||| |||||| |||||||||||||    
T  31862495 taagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagctt 31862551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 1889120 - 1889049
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 178  Q
    ||||| ||||||||||| ||  |||||||||||   ||| ||||||||||||||||| ||| ||||||||||    
T  1889120 aagctttcccaaacagtctcaaaagtgtttatgccagtagataaactcaaataagtccatctaaacagaccc 1889049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 14949875 - 14949934
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||||| ||| |||| |||| ||||||| ||||||||||||| |||| ||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgt 14949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 26473820 - 26473778
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataa 79  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataa 26473778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 14927037 - 14926901
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaa-taaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtt 135  Q
    ||||| ||||||| ||||||| ||||||| |||||| ||| | | |||||||||||||   || | || |||||||||| |||||||| ||  ||||| |    
T  14927037 taagtcgttttcagaagctatcctagaga-tttatgcaaaattagctgaaaacagcttacagacacgtcacaagctctctcaaacagtctcacaagtgct 14926939  T
Q  136 tatgttcgtaaataaactcaaataagtcgatccaaaca 173  Q
    ||||   ||||||||  ||||||||||| |||||||||    
T  14926938 tatgccagtaaataagttcaaataagtcaatccaaaca 14926901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 34770894 - 34770931
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatgga 74  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  34770894 taagttgttttcataagctatcctagagagttcatgga 34770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 42197151 - 42197196
Alignment:
Q  34 ttttaagttgttttcataagctatgctagagagtttatggaaataa 79  Q
    |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  42197151 ttttaagttgttttcataagttatactcaagagtttatggaaataa 42197196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 5088854 - 5088922
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 105  Q
    ||||||||||||| |||| || || ||||| |||| |||||||  |||||||||||| |||| ||||||    
T  5088854 taagttgttttcacaagcgatcctggagagcttattgaaataagttgaaaacagcttatggacatgtta 5088922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 9700084 - 9700160
Alignment:
Q  105 acaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccctta 181  Q
    |||||||||| |||| ||| ||  ||||||||||| | ||| |||| |||||||||||  |||||||||| ||||||    
T  9700084 acaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 9700160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 11183547 - 11183603
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||| ||||||  || ||||| |||||||||||| |||||||||||||    
T  11183547 taagctgttttcacaagctaccctggagagcttatggaaataagctgaaaacagctt 11183603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 27728104 - 27728033
Alignment:
Q  21 ttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| | ||| |||||||||||||||||| |||||| | | |||||||||| || |||| |||||    
T  27728104 ttttcatataaagtatta-gttgttttcataagctatcctagagggatgatggaaataagctaaaaaaagctt 27728033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 29169139 - 29169091
Alignment:
Q  63 agagtttatggaaataaactgaaaacagcttgtggatatgttacaagct 111  Q
    ||||||||||||||||| | ||||| ||||| ||||||||||| |||||    
T  29169139 agagtttatggaaataagccgaaaatagcttatggatatgttataagct 29169091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 16889737 - 16889789
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  16889737 taagctgttttcataagctatgctagagagtttatggaaataatctgaaaaca 16889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 40205157 - 40205068
Alignment:
Q  19 agttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagct 111  Q
    ||||||||||||||||   |||||||||||||||||||| || ||||| |||| ||||||| |||||||||| || |||| |||||| |||||    
T  40205157 agttttcatataaact---aagttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagct 40205068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 34198528 - 34198575
Alignment:
Q  129 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagac 176  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  34198528 aagtgtttatgttagtaaataaactcaaataagtcaatccaaacagac 34198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 37588445 - 37588372
Alignment:
Q  19 agttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||| || | |||||||||||||||| ||| || ||||| |||||||||||| |||||||||||||    
T  37588445 agttttcatataagctat-aagttgttttcataagttattctggagagcttatggaaataagctgaaaacagctt 37588372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 36318773 - 36318832
Alignment:
Q  34 ttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||||||||||  | |||| |||||| |||||| |||||||||||||    
T  36318773 ttttaagttgttttcataagctatcttggagaatttatgtaaataagctgaaaacagctt 36318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 15074817 - 15074751
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||| ||| || || || |||||||||||| ||||||||||||| |||| ||||    
T  15074817 taagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttatggacatgt 15074751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 37526284 - 37526211
Alignment:
Q  19 agttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||| || | |||||||||||||||| | | || ||||| |||||||||||| |||||||||||||    
T  37526284 agttttcatataagctat-aagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagctt 37526211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 37611279 - 37611227
Alignment:
Q  41 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||||  | ||||| |||||||||||| |||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagctt 37611227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 37788009 - 37787957
Alignment:
Q  41 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||||  | ||||| |||||||||||| |||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagctt 37787957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 12074394 - 12074355
Alignment:
Q  144 taaataaactcaaataagtcgatccaaacagacccttagt 183  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  12074394 taaataaactcaaataagtcaatccaaacagacctttagt 12074355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 17368678 - 17368729
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaac 88  Q
    |||||||||||||||||||||  | ||||| |||||||||||| ||||||||    
T  17368678 taagttgttttcataagctatcttggagaggttatggaaataagctgaaaac 17368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 28586850 - 28586768
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||| || |||| |||||| |  |||||| |||||||| |||| ||||||| |||||||||||||  ||||||||    
T  28586850 gttttcatataaa-ttataagctgttttgacgagctatcctagagagcttatcgaaataagctgaaaacagcttacggatatgt 28586768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 36638754 - 36638805
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| ||| |||||||| |||||||||||| ||||||| |||||    
T  36638754 tgttttcataagttatcctagagagcttatggaaataagctgaaaaaagctt 36638805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 40534284 - 40534338
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 161  Q
    ||||||||| ||||||| ||  ||||||||||||  |||||||||||||||||||    
T  40534284 aagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataag 40534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 1084121 - 1084068
Alignment:
Q  110 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtc 163  Q
    ||||| |||||||||||  ||||| ||||||  |||||||||||||||||||||    
T  1084121 ctctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataagtc 1084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 11684423 - 11684472
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||| ||||| ||| ||||||||  ||||||||||||    
T  11684423 ttttcataagctatgctggagagcttacggaaataagttgaaaacagctt 11684472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 29588865 - 29588945
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatat 101  Q
    |||||||||||| || | |||| |||||| ||||||||| |  ||||||||||||||||| ||||||| ||| | |||||||    
T  29588865 gttttcatataagctataaagt-gttttcgtaagctatgttgaagagtttatggaaataagctgaaaatagcctatggatat 29588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 30653437 - 30653388
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| | ||||| || |||||||||||| |||||||||||||    
T  30653437 ttttcataagcttttctagacagcttatggaaataagctgaaaacagctt 30653388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 2880615 - 2880563
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||| ||||||||| |   ||||||||||||||||| |||||||||    
T  2880615 taagttgtttttataagctattcagaagagtttatggaaataagctgaaaaca 2880563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 10272499 - 10272447
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||||||||||| ||  | ||||||||||| |||||| |||||||||    
T  10272499 taagttgttttcataagccatcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 10771956 - 10771908
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaa 85  Q
    ||||||| ||||||||||||| | |||||||||||| |||||| |||||    
T  10771956 taagttgctttcataagctatccgagagagtttatgaaaataagctgaa 10771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 15003582 - 15003530
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||| ||||||||||||||| | |||||| |||||||||||||  |||||||    
T  15003582 taagtggttttcataagctatccaagagagcttatggaaataaatcgaaaaca 15003530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 17777911 - 17777967
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||| ||| || ||||| |||| |||||||||| |||| |||||    
T  17777911 taagttgttttcataagttatcctggagagcttatcgaaataaactaaaaaaagctt 17777967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 18543264 - 18543213
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||||||||| || ||||| |||| ||||||| |||||||||    
T  18543264 taagttgttttcataagctatcctggagagcttat-gaaataagctgaaaaca 18543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 29659353 - 29659405
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  29659353 taagttgttttcataagttatcttagagagtttatataaataagctgaaaaca 29659405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 38104917 - 38104873
Alignment:
Q  45 tttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||||||  ||||||| |||||||||||| |||||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaaca 38104873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 39505957 - 39506014
Alignment:
Q  36 ttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||| |||||    
T  39505957 ttaagttgttttcataagctattctggagagtttatggaaataagctgaaaatagctt 39506014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 24363669 - 24363603
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||||||| || ||||| |||||||||||| ||||||||| ||| |||| ||||    
T  24363669 taagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgt 24363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 37064307 - 37064236
Alignment:
Q  20 gttttcatataaacttttaagttgttttc--ataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||| |||||||||||||  |||||||||  ||||||| ||||| ||||||||| ||||||    
T  37064307 gttttcatataaactcttaagttgttttcatataagctatcatagagagcttatgaaaataaacttaaaaca 37064236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 44615167 - 44615106
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||| ||  || ||||||||||||||||||  ||||||||||||||||| ||||    
T  44615167 tgttttcataagttagccttgagagtttatggaaataacgtgaaaacagcttgtggacatgt 44615106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 529382 - 529521
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgtt 141  Q
    ||||||||||||||||  | ||||| ||||| |||||   |||||||||||| || |  ||| | ||| ||||||||| ||  ||  |||||||||||      
T  529382 tgttttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttatgaacttgtcataagttctcccaaatagcctcacaagtgtttatgcc 529481  T
Q  142 cgtaaataaactcaaataagtcgatccaaacagaccctta 181  Q
     ||| |||| |||||||||||| |||||| ||||||||||    
T  529482 agtagataagctcaaataagtcaatccaatcagaccctta 529521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 1710744 - 1710799
Alignment:
Q  49 ataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtt 104  Q
    ||||||||| |||||||| |||||||||||| |||||||||| || |||| |||||    
T  1710744 ataagctattctagagaggttatggaaataagctgaaaacagtttatggagatgtt 1710799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 30535652 - 30535715
Alignment:
Q  111 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    ||||| ||||||| ||| ||||||||||||  |||||| |||||||||||||| || |||||||    
T  30535652 tctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataagtcaattcaaacag 30535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 2825299 - 2825249
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaa 87  Q
    ||||||||||||| ||||||| |||||||  |||||||||||| |||||||    
T  2825299 taagttgttttcacaagctatcctagagaacttatggaaataagctgaaaa 2825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 10079324 - 10079270
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataag 161  Q
    |||||||||||||||   || |||||||||||| |||||||||| ||||||||||    
T  10079324 aagctctcccaaacaacctcataagtgtttatgctcgtaaataagctcaaataag 10079270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 4966158 - 4966219
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    |||| ||||||||||||| || ||  |||| |||||||||||||||||||||| ||| ||||    
T  4966158 taagctgttttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatgga 4966219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 26935618 - 26935569
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||| |||| ||| |||| |||||||||||| |||||||||||||    
T  26935618 ttttcataatctattctaaagagcttatggaaataagctgaaaacagctt 26935569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 38010700 - 38010772
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| || | ||| ||||||||||| |||| |||||||  |||||||||||| || ||||||||||    
T  38010700 gttttcatataagctat-aagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagctt 38010772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 5010445 - 5010389
Alignment:
Q  118 aacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    |||||| || |||||||| ||| | ||||||||||||||||||||| ||| ||||||    
T  5010445 aacagtctcgtaagtgttcatgctagtaaataaactcaaataagtcaatcaaaacag 5010389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 20553105 - 20553157
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||| ||| ||| |||| ||| |||||||||||| |||||||||    
T  20553105 taagttgttttcacaagttatcctagtgagcttatggaaataatctgaaaaca 20553157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27496449 - 27496409
Alignment:
Q  63 agagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||| ||||||||||||| |||| ||||    
T  27496449 agagtttatggaaataagctgaaaacagcttatggacatgt 27496409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27503107 - 27503067
Alignment:
Q  63 agagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||| ||||||||||||| |||| ||||    
T  27503107 agagtttatggaaataagctgaaaacagcttatggacatgt 27503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 46104635 - 46104583
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||||||||||||  |||| ||||| |||||| ||| |||||    
T  46104635 taagttgttttcataagctatgctgaagagcttatgaaaataagctggaaaca 46104583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 13709886 - 13709755
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgtt 141  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||| ||| ||||  ||| | || |||||| ||| ||| ||  ||||| ||||       
T  13709886 tgttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatggacttgtcataaactctcctaaatagtctcacaagtgcttatccc 13709787  T
Q  142 cgtaaataaactcaaataagtcgatccaaaca 173  Q
     ||| ||||| |||||||||||||| ||||||    
T  13709786 agtagataaattcaaataagtcgatgcaaaca 13709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 22214743 - 22214661
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||| || | |||||||||||||||||||| |||||||  ||| |||||||| ||||||||||||| |||| ||||    
T  22214743 gttttcatataacctat-aagttgttttcataagctatcctagagacattacggaaataagctgaaaacagcttatggacatgt 22214661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 36646466 - 36646389
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    ||||||||||||  || ||| ||||||||||||||||| ||||||||||||| |||||||  |||||||||||| ||||    
T  36646466 gttttcatataag-ttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatgga 36646389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 31403153 - 31403234
Alignment:
Q  41 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacag 122  Q
    ||||||| ||||||||| |||||||||| |||| ||||| ||||||||||||| |||| |||  | |||||||| |||||||    
T  31403153 ttgttttgataagctatcctagagagttcatggtaataagctgaaaacagcttatggacatgacataagctctctcaaacag 31403234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 14548806 - 14548735
Alignment:
Q  19 agttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagc 91  Q
    ||||||||||||| || | |||||||||||||||| ||| || ||||| |||||||||||| |||||||||||    
T  14548806 agttttcatataagctat-aagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 30923961 - 30923910
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||| |||| ||||||||||||| ||||||| |||||||||||||    
T  30923961 tgttttcataacctatcctagagagtttatagaaataagctgaaaacagctt 30923910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 237399 - 237460
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    ||||||||||||||||| ||| ||| |||| ||| |||||||| ||||||||||||| ||||    
T  237399 taagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagcttatgga 237460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 30322088 - 30322032
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||| ||| ||| |||| ||||||||||||| |||| |||||||    
T  30322088 taagttgttttcataagttatcctaaagagcttatggaaataaattgaacacagctt 30322032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 12923356 - 12923250
Alignment:
Q  74 aaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaaca 173  Q
    |||||| ||||||||| ||| |||| |||| | ||||||||||||||||| ||    ||| ||||||| ||| |||||||||||||| || ||| |||||    
T  12923356 aaataagctgaaaacaacttatggacatgtcataagctctcccaaacagtctc---ggtgcttatgttagtagataaactcaaataactcaatcaaaaca 12923260  T
Q  174 gacccttagt 183  Q
      ||||||||    
T  12923259 tgcccttagt 12923250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 21367669 - 21367728
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 96  Q
    |||||||||||||||||||||  | ||||  ||||| |||||| ||||||||||||||||    
T  21367669 taagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtg 21367728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 49845525 - 49845458
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaacag 174  Q
    ||||||||||||| |||||| ||||| |||||  | ||| |||| |||||||||||| ||||||||||    
T  49845525 aagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacag 49845458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 1816585 - 1816639
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagc 91  Q
    ||||||||||||||||||||| || ||||| ||||  |||||| |||||||||||    
T  1816585 taagttgttttcataagctatactggagagcttatcaaaataagctgaaaacagc 1816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 30321999 - 30321937
Alignment:
Q  111 tctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaaca 173  Q
    |||||||||||||||| || ||||||||||  |||||||| |||||| ||||  |||||||||    
T  30321999 tctcccaaacagtttcataggtgtttatgtcagtaaataagctcaaagaagttcatccaaaca 30321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 44284143 - 44284085
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggata 100  Q
    |||||||||||||||| || ||||| |||| ||||||| ||||||| ||||| ||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatagcttatggata 44284085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 48528563 - 48528609
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaac 88  Q
    |||||||||||||||| || |||||||||| ||||||| ||||||||    
T  48528563 tgttttcataagctattctggagagtttatagaaataagctgaaaac 48528609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 37138292 - 37138345
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 90  Q
    |||||| ||||||||||||||  ||||||||||| | |||||| ||||||||||    
T  37138292 taagttattttcataagctatcttagagagtttaggaaaataagctgaaaacag 37138345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 39311742 - 39311705
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataa 79  Q
    |||||||||||||||| || ||||||||||||||||||    
T  39311742 tgttttcataagctatactggagagtttatggaaataa 39311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 41848679 - 41848630
Alignment:
Q  129 aagtgtttatgttcgtaaataaactcaaataagtcgatccaaacagaccc 178  Q
    ||||||||||||| ||| ||||||||||||||||| ||| ||| ||||||    
T  41848679 aagtgtttatgttagtagataaactcaaataagtcaatctaaatagaccc 41848630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 48049049 - 48048984
Alignment:
Q  38 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||| ||||||  | | ||| |||||||||||| ||||||||||||| |||| ||||    
T  48049049 aagttgttttcattagctatcttggggaggttatggaaataagctgaaaacagcttatggacatgt 48048984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 24887346 - 24887298
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacag 90  Q
    |||||||||||||||| || ||||| |||||| ||||| ||||||||||    
T  24887346 tgttttcataagctatcctggagagcttatgggaataagctgaaaacag 24887298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 41644513 - 41644457
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| ||||||||||||||||  ||||||  ||| |||||||| |||||||||||||    
T  41644513 taagctgttttcataagctatcgtagagatcttaaggaaataagctgaaaacagctt 41644457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 47904025 - 47903993
Alignment:
Q  147 ataaactcaaataagtcgatccaaacagaccct 179  Q
    ||||||||||||||||| |||||||||||||||    
T  47904025 ataaactcaaataagtcaatccaaacagaccct 47903993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 5157157 - 5157221
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaa 171  Q
    ||||||||||||||||||||  |||||||||||| |||| ||||  ||||||||||| |||||||    
T  5157157 aagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaa 5157221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25479583 - 25479635
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||||||||||| |||||||| ||||| |||||| |||||||||    
T  25479583 taagttgttttcataagctatcctagagagcttatgaaaataagctgaaaaca 25479635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 51929843 - 51929787
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||||||| |||||||| |||||||||||| | |||| ||||||    
T  51929843 taagctgttttcataagctattctagagagcttatggaaataagccgaaatcagctt 51929787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 6279408 - 6279467
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    |||||||||||||| |||||||| |||||||||||  ||||||||| ||| |||| ||||    
T  6279408 ttttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 28467521 - 28467584
Alignment:
Q  110 ctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataagtcgatccaaaca 173  Q
    |||||||||| ||| || |||||| | ||| | ||||||||||||||||||||| |||||||||    
T  28467521 ctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaatccaaaca 28467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 5924057 - 5924099
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataa 79  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||    
T  5924057 taagttgttttcataagttatcctagagagcttatggaaataa 5924099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 30257683 - 30257741
Alignment:
Q  35 tttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||||| |||| || ||| | |||| ||||||| |||||||||||||    
T  30257683 tttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagctt 30257741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 50319273 - 50319311
Alignment:
Q  38 aagttgttttcataagctatgctagagagtttatggaaa 76  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  50319273 aagttgttttcataagctatcctagagagcttatggaaa 50319311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 40751214 - 40751181
Alignment:
Q  21 ttttcatataaacttttaagttgttttcataagc 54  Q
    |||||||||||||| |||||||||||||||||||    
T  40751214 ttttcatataaactattaagttgttttcataagc 40751181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 47598489 - 47598428
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtgga 98  Q
    ||||||||||||||||||||| || ||||| |||||| || || ||||||||| ||| ||||    
T  47598489 taagttgttttcataagctatcctggagagcttatggcaacaagctgaaaacaacttatgga 47598428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 7218158 - 7218083
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtg 96  Q
    |||||||||||| || | ||||||||||||||| |||| || ||||  ||||| ||||||  |||||||||||||||    
T  7218158 gttttcatataagctat-aagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtg 7218083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 15361715 - 15361767
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||| ||| || |||||||||||||| ||| |||||||||    
T  15361715 taagctgttttcataagatattcttgagagtttatggaattaagctgaaaaca 15361767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 15437966 - 15438014
Alignment:
Q  38 aagttgttttcataagctatgctagagagtttatggaaataaactgaaa 86  Q
    |||||||||||||| ||||| || ||||||||| |||||||| ||||||    
T  15437966 aagttgttttcataggctatcctcgagagtttacggaaataagctgaaa 15438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 23902135 - 23902083
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    ||||||||||||| |||||||  ||||||| |||||||| ||| |||||||||    
T  23902135 taagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaaca 23902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  44 ttttcataagctatgctagagagtttatggaaataaactgaaaac 88  Q
    ||||||||||||||||||||||  ||| |||||||| ||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 32515426 - 32515374
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaata 159  Q
    ||||||||||||||||| ||  ||||| ||||||| ||| |||||||||||||    
T  32515426 aagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 33976688 - 33976744
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||  |||||| |||||    
T  33976688 taagttgttttcttaacctatcctagagagcttatggaaataagttgaaaaaagctt 33976744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 35925696 - 35925748
Alignment:
Q  41 ttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||| ||||||||||  | ||||||||||||||||||  ||||||||||||    
T  35925696 ttgtttccataagctatcatggagagtttatggaaataagttgaaaacagctt 35925748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 306329 - 306384
Alignment:
Q  38 aagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||||||||||||||||| |||||||| ||||| || ||| |||||||||||||    
T  306329 aagttgttttcataagctatcctagagagcttatgtaagtaagctgaaaacagctt 306384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 2117405 - 2117461
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    ||||||||||||||||| ||| |||||||| |||| ||||||| || ||||||||||    
T  2117405 taagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagctt 2117461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 5564194 - 5564110
Alignment:
Q  39 agttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagt 123  Q
    ||||||||||||||||| |  |  |||||||||| |||||| |||||||||||||  ||| |||| | ||| |||||||||||||    
T  5564194 agttgttttcataagctgtcttgaagagtttatgcaaataagctgaaaacagctttcggacatgtcataagatctcccaaacagt 5564110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 34939755 - 34939798
Alignment:
Q  46 ttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||||| || |||||||||||||||||| |||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaaca 34939798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 281932 - 281864
Alignment:
Q  20 gttttcatataaacttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||||| || | ||| ||| |||||||||||| |||||||| | |||||||||| |||||||||    
T  281932 gttttcatataagctat-aagctgtgttcataagctatcctagagagctcatggaaataagctgaaaaca 281864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 7931854 - 7931805
Alignment:
Q  40 gttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||||||||| ||||||| ||| |||| |||||||||||| |||||||||    
T  7931854 gttgttttcacaagctatcctatagagcttatggaaataagctgaaaaca 7931805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 19275699 - 19275638
Alignment:
Q  42 tgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgt 103  Q
    ||||||||||||||||  |  |||| |||||||||||||| |||| ||||||||||| ||||    
T  19275699 tgttttcataagctatcatgaagagcttatggaaataaaccgaaatcagcttgtggacatgt 19275638  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 27857443 - 27857496
Alignment:
Q  107 aagctctcccaaacagtttcttaagtgtttatgttcgtaaataaactcaaataa 160  Q
    ||||||||||||||||||||  |||||| |||||  ||| ||||||||||||||    
T  27857443 aagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataa 27857496  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 4420645 - 4420701
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||||| ||||| ||||||||  | ||||| |||||||||||| |||||||||||||    
T  4420645 taagttattttcctaagctatcttggagagcttatggaaataagctgaaaacagctt 4420701  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 9732478 - 9732546
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgtta 105  Q
    ||||||||||||| ||| ||| || |||||||||| ||| ||| |||||||||| || |||| ||||||    
T  9732478 taagttgttttcacaagttatccttgagagtttatagaagtaagctgaaaacagtttatggacatgtta 9732546  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 14492304 - 14492356
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaaca 89  Q
    |||| |||||||||||| ||| ||||||||||| ||||||| | |||||||||    
T  14492304 taagctgttttcataagttatcctagagagtttgtggaaatcagctgaaaaca 14492356  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 31686434 - 31686378
Alignment:
Q  34 ttttaagttgttttcataagctatgctagagagtttatggaaataaactgaaaacag 90  Q
    ||||||| |||||||||||||||| || ||||| ||| ||| |||| ||||||||||    
T  31686434 ttttaagctgttttcataagctatcctggagagcttacggacataagctgaaaacag 31686378  T

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Target: scaffold0200 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 29704 - 29659
Alignment:
Q  147 ataaactcaaataagtcgatccaaacagacccttagttcataaaat 192  Q
    |||||||||||||||||||||| |||||||||| | ||| ||||||    
T  29704 ataaactcaaataagtcgatcctaacagaccctaatttcttaaaat 29659  T

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Target: scaffold0159 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 27017 - 27089
Alignment:
Q  51 aagctatgctagagagtttatggaaataaactgaaaacagcttgtggatatgttacaagctctcccaaacagt 123  Q
    |||||||  ||||||| |||||||||||| |||||||||| || || | |||| | |||||||| ||||||||    
T  27017 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataagctctcgcaaacagt 27089  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 160041 - 159985
Alignment:
Q  37 taagttgttttcataagctatgctagagagtttatggaaataaactgaaaacagctt 93  Q
    |||| |||||||||||||||| ||| |||| || ||||||||| |||||||| ||||    
T  160041 taagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgctt 159985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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