View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_23 (Length: 388)
Name: NF17836_high_23
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 36525236 - 36524882
Alignment:
| Q |
18 |
cataatacttaaggggtactggaacctgcctttacagtgttggcacattgtccagaatatcagttgtgcagcattcagatggggattccaagggacattt |
117 |
Q |
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| T |
36525236 |
cataatacttaaggggtactggaacctgcctttacagtgttggcacattgtccagaatatcagttgtgcagcattcagatggggattccaagggacattt |
36525137 |
T |
|
| Q |
118 |
gaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525136 |
gaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcac |
36525037 |
T |
|
| Q |
218 |
tcacatgagctttaactatcatgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcacc |
317 |
Q |
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| T |
36525036 |
tcacatgagctttaactatcatgtcctataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcacc |
36524937 |
T |
|
| Q |
318 |
agcaaatttatttttatcaggatgaagtagcaatgcgagttttctgtactgtttc |
372 |
Q |
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|| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
36524936 |
agtaaatttatttttatcaagatgaagtagcaatccgagttttctgtactgtttc |
36524882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 60 - 372
Target Start/End: Complemental strand, 36531529 - 36531217
Alignment:
| Q |
60 |
gcacattgtccagaatatcagttgtgcagcattcagatggggattccaag--ggaca-tttgaagaatatttttccgggtattttgtggcatttggaact |
156 |
Q |
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| T |
36531529 |
gcacattgtccagaatgtcggctgtgcaggtttcagatggggattcaaagaaggagagtttgaagaacattttttctgatgttttgttgcattaggaact |
36531430 |
T |
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| Q |
157 |
tgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatcatgtcgtataaagatcact |
256 |
Q |
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|||||| ||||| | ||| |||| ||| |||||||||| ||||||| | ||||| | || ||||| |||||||| | |||||||||||||| | | |
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| T |
36531429 |
tgatttgctgcaggt---ttcccattagagggatgggatgaggtcttagatgctgcagctctaacatgggctttaacctttatgtcgtataaagaccgcg |
36531333 |
T |
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| Q |
257 |
ttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcaatgcgag |
356 |
Q |
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|||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
36531332 |
ttgctttatcactcaacaccctattggcttccccaatcaacttgaaagcagcttctgcaccagcagatttatttttatcaggatgaagtagcagtgcaag |
36531233 |
T |
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| Q |
357 |
ttttctgtactgtttc |
372 |
Q |
| |
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|| ||||||||||| |
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| T |
36531232 |
cttcttgtactgtttc |
36531217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 368
Target Start/End: Original strand, 26305989 - 26306118
Alignment:
| Q |
239 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
338 |
Q |
| |
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|||| |||||||||| | |||||||||| |||| || ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| |
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| T |
26305989 |
tgtcatataaagatcgttgtgcttggtcactcaaaaccctattggcttctccaatcaacttgaaagcagcttcagcaccagaaaatttatttttatcagg |
26306088 |
T |
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| Q |
339 |
atgaagtagcaatgcgagttttctgtactg |
368 |
Q |
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||||||||||| |||||| ||||||||||| |
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| T |
26306089 |
atgaagtagcagtgcgagctttctgtactg |
26306118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 26305825 - 26305963
Alignment:
| Q |
33 |
gtactggaacctgcctttacagtgttggcacattgtccagaatatcagttgtgcagcattcagatggggattccaag---ggacatttgaagaatatttt |
129 |
Q |
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|||||||||||||| ||||| |||||||| | |||||||||| || ||| |||||| || |||||||||||||||| ||| |||||| || |||| |
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| T |
26305825 |
gtactggaacctgctattacaatgttggcaaactgtccagaatgtctgttttgcagctttgagatggggattccaagaagggaagtttgaaaaaactttt |
26305924 |
T |
|
| Q |
130 |
tccgggtattttgtggcatttggaacttgattttctgca |
168 |
Q |
| |
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| | ||||||||| | |||||||||||||||| ||||| |
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| T |
26305925 |
ttccagtattttgttgtatttggaacttgatttgctgca |
26305963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 47090535 - 47090640
Alignment:
| Q |
244 |
tataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaa |
343 |
Q |
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|||||||| | ||||| ||||||| |||| || || || || ||| | ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
47090535 |
tataaagaacgctttgtttggtcactcaatactctgttagcatccacgatcaacttgaaagcagcctctgccccagcagatttatttttatcaggatgaa |
47090634 |
T |
|
| Q |
344 |
gtagca |
349 |
Q |
| |
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|||||| |
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| T |
47090635 |
gtagca |
47090640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 6791535 - 6791477
Alignment:
| Q |
283 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatg |
341 |
Q |
| |
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||||||||||||| ||| || |||||||||||||||||||| || ||||| |||||||| |
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| T |
6791535 |
gcttccccaatcagcttaaatgcagcttctgcaccagcaaacttgtttttgtcaggatg |
6791477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 49156796 - 49156858
Alignment:
| Q |
283 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagt |
345 |
Q |
| |
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||||| ||||||| ||| || |||||||| ||||| ||||| || |||||||||||||||||| |
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| T |
49156796 |
gcttctccaatcagcttaaatgcagcttcagcaccggcaaacttgtttttatcaggatgaagt |
49156858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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