View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_high_25 (Length: 377)

Name: NF17836_high_25
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_high_25
NF17836_high_25
[»] chr1 (18 HSPs)
chr1 (1-367)||(10993917-10994283)
chr1 (120-367)||(11005233-11005480)
chr1 (124-367)||(10901309-10901552)
chr1 (220-357)||(11032933-11033070)
chr1 (175-367)||(10979031-10979223)
chr1 (202-367)||(11010624-11010789)
chr1 (203-354)||(11007463-11007614)
chr1 (166-367)||(10932667-10932869)
chr1 (174-367)||(10914295-10914488)
chr1 (202-367)||(10903163-10903328)
chr1 (202-367)||(11028820-11028985)
chr1 (255-324)||(9348803-9348872)
chr1 (255-318)||(9234322-9234385)
chr1 (255-296)||(9255310-9255351)
chr1 (255-296)||(9318572-9318613)
chr1 (255-296)||(9319689-9319730)
chr1 (255-296)||(9350006-9350047)
chr1 (255-324)||(9384009-9384078)
[»] chr6 (1 HSPs)
chr6 (255-324)||(15927450-15927519)
[»] chr3 (1 HSPs)
chr3 (255-324)||(9159379-9159448)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 10994283 - 10993917
Alignment:
Q  1 tgattgcatctgttttattatttcttacattgctatcgatactcatagtgtaattttgattggttagaaatgccatgaaccaagaagttcgatgcaaatt 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994283 tgattgcatctgttttattttgtcttacattgctatcgatactcatagtgtaattttgattggttagaaatgccatgaaccaagaagttcgatgcaaatt 10994184  T
Q  101 gggtgggattattaggcttgttccatggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggta 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994183 gggagggattattaggcttgttccatggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggta 10994084  T
Q  201 tatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10994083 tatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactagg 10993984  T
Q  301 ttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10993983 ttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 10993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 120 - 367
Target Start/End: Complemental strand, 11005480 - 11005233
Alignment:
Q  120 gttccatggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggta 219  Q
    |||||||| ||||| || |||||| | |||||||||||||||||   |||||| || ||||||||| ||| || ||||||| ||||||||||||||||||    
T  11005480 gttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagctggtagatcttgtggataaaggta 11005381  T
Q  220 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  11005380 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcacctggttttgtctgtatacaccat 11005281  T
Q  320 aatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  11005280 aaagccacaatcatcattttctttgccaatttcatttcttcatctgtg 11005233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 124 - 367
Target Start/End: Original strand, 10901309 - 10901552
Alignment:
Q  124 catggaatcaattcttgatgcaccagaggaagaccaagaaacgctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggc 223  Q
    |||| ||||| || |||||| | |||||||| |||| |||   |||||| ||||||||| || ||| || ||||||| ||||||||||||||||||||||    
T  10901309 catgaaatcatttattgatgtatcagaggaaaaccacgaacttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggc 10901408  T
Q  224 ttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatg 323  Q
    || |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10901409 ttcttaggcatttgcaaatccccatcttcttatgcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatg 10901508  T
Q  324 ccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  10901509 ccacaatcatcgttttctttgccaatttcatttcttcatctgtg 10901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 11032933 - 11033070
Alignment:
Q  220 aggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccat 319  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||     
T  11032933 aggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccac 11033032  T
Q  320 aatgccacaatcatcattttctttgccaatttcatttc 357  Q
    || ||||| |||||||||||||||||||||||||||||    
T  11033033 aaagccactatcatcattttctttgccaatttcatttc 11033070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 367
Target Start/End: Original strand, 10979031 - 10979223
Alignment:
Q  175 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 274  Q
    |||||||| |||||| ||| |||||  |||||||  | ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10979031 atcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 10979130  T
Q  275 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||    
T  10979131 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtg 10979223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 202 - 367
Target Start/End: Original strand, 11010624 - 11010789
Alignment:
Q  202 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 301  Q
    |||||||||| ||| ||||||||||||||| || ||||| || ||||||||||||||||||||||| |  ||||||||||||||||||||||||  ||||    
T  11010624 atcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcatcaggt 11010723  T
Q  302 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| |  |||||||| | |||||||    
T  11010724 tttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtg 11010789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 11007463 - 11007614
Alignment:
Q  203 tcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggtt 302  Q
    ||||||| || ||||| ||||| ||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  11007463 tcttgtgcatcaaggtcaggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtt 11007562  T
Q  303 ttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcat 354  Q
    | |  ||||||||||| || ||||| ||||||||||||||||||||||||||    
T  11007563 tcgcttgaatacaccacaaagccactatcatcattttctttgccaatttcat 11007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 166 - 367
Target Start/End: Original strand, 10932667 - 10932869
Alignment:
Q  166 gctagtactatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatc 265  Q
    |||| |||||| ||||| |||||| ||| |||||  |||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10932667 gctactactattatctccaacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatc 10932766  T
Q  266 t-caatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatct 364  Q
    | | |  ||||| |||||||||||||||||    || ||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| | ||||    
T  10932767 tcctaaaactttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatct 10932866  T
Q  365 gtg 367  Q
    |||    
T  10932867 gtg 10932869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 10914295 - 10914488
Alignment:
Q  174 tatcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcac 273  Q
    ||||||||| ||||||  ||| ||||  |||||||||| |||  |||||||||||||| |||||||| || ||||||||||||||||||||||| |  ||    
T  10914295 tatcatctccaacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaac 10914394  T
Q  274 tttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    ||| |||||||||||||||||    |||||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||    
T  10914395 tttttccattgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtg 10914488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 367
Target Start/End: Original strand, 10903163 - 10903328
Alignment:
Q  202 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 301  Q
    |||||||||| ||| ||||||||||||||| ||||| || ||||||||||||| |||||||||||| |  |||||||||||||||||||||||    |||    
T  10903163 atcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattgaaggacgatcctcgggt 10903262  T
Q  302 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    ||||| || |||||||| || |||||  |||||||||||||||||||||||||||| | |||||||    
T  10903263 tttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtg 10903328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 367
Target Start/End: Complemental strand, 11028985 - 11028820
Alignment:
Q  202 atcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcactaggt 301  Q
    |||||| ||| ||| ||||||||||||||| |||||||| || ||||||||||||||||||||||| |  |||||||||||||||||||||||    |||    
T  11028985 atcttgcggacaaaagtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggt 11028886  T
Q  302 tttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtg 367  Q
    ||||| || |||||||| || ||| || |||||||||||||||||||||||||||| | |||||||    
T  11028885 tttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtg 11028820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 9348872 - 9348803
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 324  Q
    |||| |||||||| || ||||||| ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9348872 cttcgagcatctctattactttattcattgcaggacgatcacttggttttaactgtatacaccataatgc 9348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 9234385 - 9234322
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacacca 318  Q
    |||||||||||||||  ||||| | |||||||||||||||||| |||||   ||||||||||||    
T  9234385 cttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacacca 9234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 9255351 - 9255310
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcac 296  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  9255351 cttcaagcatctctatcactttattcattgagggacgatcac 9255310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 9318613 - 9318572
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcac 296  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9318613 cttcaagcatctctatcactttgttcattgaaggacgatcac 9318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 9319689 - 9319730
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcac 296  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9319689 cttcaagcatctctatcactttgttcattgaaggacgatcac 9319730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 9350006 - 9350047
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcac 296  Q
    ||||||||||||| |||||||| | |||||||||||||||||    
T  9350006 cttcaagcatctctatcactttgttcattgaaggacgatcac 9350047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 9384009 - 9384078
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 324  Q
    |||||||||||||||  ||||| | ||||| |||||||||||| |||||   |||||||||||| |||||    
T  9384009 cttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgc 9384078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 15927519 - 15927450
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 324  Q
    ||||||||||||| |||||| | | |||||||||||||||||| ||||||   |||||||||||||||||    
T  15927519 cttcaagcatctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgc 15927450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 9159379 - 9159448
Alignment:
Q  255 cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgc 324  Q
    |||| |||||||| || ||||| | ||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  9159379 cttcgagcatctctattactttgttcattgcaggacgatcacttggttttaactgtatacaccataatgc 9159448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University