View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_high_27 (Length: 360)

Name: NF17836_high_27
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_high_27
NF17836_high_27
[»] chr6 (16 HSPs)
chr6 (18-345)||(25186763-25187090)
chr6 (252-345)||(14781983-14782076)
chr6 (268-345)||(5675491-5675568)
chr6 (268-345)||(31848054-31848130)
chr6 (281-345)||(18489749-18489813)
chr6 (268-337)||(4103091-4103160)
chr6 (281-345)||(16477626-16477691)
chr6 (250-345)||(5195533-5195627)
chr6 (251-345)||(9756472-9756567)
chr6 (270-342)||(2854115-2854186)
chr6 (268-344)||(12607242-12607317)
chr6 (21-78)||(5195306-5195363)
chr6 (252-345)||(10286058-10286150)
chr6 (256-342)||(29362314-29362399)
chr6 (21-79)||(9756232-9756290)
chr6 (281-345)||(31794673-31794737)
[»] chr7 (24 HSPs)
chr7 (18-345)||(42453391-42453715)
chr7 (252-342)||(14241281-14241371)
chr7 (253-345)||(41242163-41242255)
chr7 (268-345)||(22681441-22681518)
chr7 (253-345)||(6459080-6459171)
chr7 (251-342)||(17263375-17263465)
chr7 (252-345)||(7566944-7567037)
chr7 (252-345)||(8752472-8752565)
chr7 (252-337)||(13427957-13428041)
chr7 (252-345)||(21120570-21120662)
chr7 (252-345)||(32215580-32215672)
chr7 (252-345)||(38889910-38890002)
chr7 (252-329)||(3091969-3092045)
chr7 (252-345)||(20398850-20398942)
chr7 (253-342)||(38651280-38651368)
chr7 (252-345)||(43656110-43656201)
chr7 (251-323)||(22358716-22358788)
chr7 (281-345)||(45140133-45140197)
chr7 (264-330)||(29802780-29802845)
chr7 (24-135)||(644773-644884)
chr7 (21-83)||(8752221-8752283)
chr7 (20-82)||(17263147-17263209)
chr7 (269-338)||(13778245-13778314)
chr7 (270-310)||(27294256-27294295)
[»] chr2 (22 HSPs)
chr2 (18-345)||(17607401-17607729)
chr2 (252-345)||(12915742-12915835)
chr2 (253-345)||(45701188-45701280)
chr2 (255-345)||(2220097-2220187)
chr2 (252-345)||(1206420-1206513)
chr2 (264-345)||(42184089-42184170)
chr2 (243-345)||(28543749-28543851)
chr2 (253-345)||(3376120-3376211)
chr2 (250-345)||(30515782-30515876)
chr2 (252-345)||(10005232-10005324)
chr2 (268-345)||(28209993-28210070)
chr2 (264-345)||(41647138-41647219)
chr2 (253-345)||(45468150-45468243)
chr2 (261-345)||(3203243-3203328)
chr2 (252-345)||(33006689-33006781)
chr2 (252-345)||(39994657-39994749)
chr2 (258-345)||(26404989-26405077)
chr2 (252-306)||(11123652-11123705)
chr2 (20-98)||(42183810-42183888)
chr2 (252-337)||(32603304-32603388)
chr2 (272-330)||(26438353-26438410)
chr2 (281-345)||(28157716-28157780)
[»] chr3 (15 HSPs)
chr3 (21-345)||(7676770-7677093)
chr3 (255-345)||(30188542-30188632)
chr3 (252-345)||(7638885-7638978)
chr3 (252-345)||(7937443-7937535)
chr3 (252-345)||(21477741-21477833)
chr3 (252-344)||(10752221-10752313)
chr3 (281-345)||(10773250-10773314)
chr3 (252-345)||(16898626-16898718)
chr3 (273-345)||(29685632-29685704)
chr3 (268-327)||(19667499-19667558)
chr3 (270-310)||(12215524-12215563)
chr3 (21-75)||(19667752-19667806)
chr3 (283-345)||(25280389-25280451)
chr3 (276-345)||(30045254-30045322)
chr3 (280-345)||(41748781-41748846)
[»] chr5 (25 HSPs)
chr5 (20-345)||(23256917-23257242)
chr5 (252-345)||(37268317-37268410)
chr5 (270-345)||(26397286-26397361)
chr5 (252-345)||(21269879-21269972)
chr5 (252-345)||(21271893-21271986)
chr5 (252-345)||(38099554-38099646)
chr5 (280-345)||(40632648-40632713)
chr5 (268-342)||(7123934-7124008)
chr5 (253-337)||(24251286-24251370)
chr5 (252-345)||(17945875-17945967)
chr5 (281-345)||(21825219-21825284)
chr5 (257-345)||(9194543-9194631)
chr5 (270-345)||(1585473-1585547)
chr5 (252-342)||(18149364-18149453)
chr5 (259-345)||(39565366-39565450)
chr5 (282-345)||(13390352-13390415)
chr5 (250-308)||(33651254-33651312)
chr5 (252-345)||(15504881-15504973)
chr5 (21-125)||(9194758-9194862)
chr5 (281-345)||(23264111-23264175)
chr5 (271-345)||(17696034-17696107)
chr5 (312-345)||(12824338-12824371)
chr5 (272-345)||(16120013-16120085)
chr5 (280-345)||(20251511-20251576)
chr5 (276-345)||(37414637-37414705)
[»] chr4 (32 HSPs)
chr4 (184-345)||(46191195-46191356)
chr4 (252-345)||(13159699-13159792)
chr4 (252-345)||(44546612-44546705)
chr4 (270-345)||(135821-135895)
chr4 (238-344)||(20177379-20177484)
chr4 (240-345)||(55284841-55284947)
chr4 (252-345)||(1463319-1463412)
chr4 (268-345)||(17186270-17186347)
chr4 (252-345)||(21141909-21142002)
chr4 (252-345)||(42396697-42396789)
chr4 (253-345)||(39868311-39868402)
chr4 (269-345)||(16736169-16736246)
chr4 (252-345)||(26893331-26893423)
chr4 (252-345)||(28709150-28709242)
chr4 (21-120)||(21141678-21141777)
chr4 (252-345)||(17712673-17712765)
chr4 (268-345)||(22322413-22322490)
chr4 (268-345)||(24010498-24010575)
chr4 (252-309)||(28740816-28740873)
chr4 (268-345)||(52762930-52763006)
chr4 (252-300)||(135895-135943)
chr4 (242-345)||(34684017-34684120)
chr4 (264-330)||(7272679-7272745)
chr4 (272-337)||(11821501-11821567)
chr4 (252-306)||(14546389-14546443)
chr4 (252-345)||(36825778-36825871)
chr4 (252-345)||(48782508-48782602)
chr4 (268-345)||(37013918-37013995)
chr4 (276-345)||(14453918-14453986)
chr4 (268-345)||(41007234-41007311)
chr4 (268-344)||(18430433-18430508)
chr4 (253-345)||(30036606-30036697)
[»] chr1 (13 HSPs)
chr1 (22-345)||(12526941-12527263)
chr1 (252-345)||(10349521-10349614)
chr1 (268-345)||(20819603-20819680)
chr1 (252-329)||(39581405-39581483)
chr1 (268-345)||(24509317-24509393)
chr1 (281-345)||(7637638-7637702)
chr1 (260-323)||(12396356-12396417)
chr1 (252-345)||(24308277-24308369)
chr1 (18-83)||(33567412-33567477)
chr1 (269-343)||(1870486-1870560)
chr1 (27-80)||(24308541-24308594)
chr1 (272-345)||(33855469-33855542)
chr1 (272-345)||(33925380-33925453)
[»] chr8 (11 HSPs)
chr8 (252-345)||(17936326-17936419)
chr8 (253-345)||(15172800-15172892)
chr8 (252-329)||(39143298-39143374)
chr8 (250-345)||(15353331-15353425)
chr8 (282-345)||(29934709-29934772)
chr8 (229-306)||(39919336-39919412)
chr8 (269-345)||(21313795-21313872)
chr8 (252-345)||(9018047-9018144)
chr8 (282-345)||(1219198-1219261)
chr8 (276-305)||(20877279-20877308)
chr8 (27-67)||(13368359-13368399)
[»] scaffold0074 (2 HSPs)
scaffold0074 (252-345)||(36042-36135)
scaffold0074 (21-80)||(36308-36367)
[»] scaffold1251 (1 HSPs)
scaffold1251 (280-342)||(861-922)
[»] scaffold0267 (1 HSPs)
scaffold0267 (252-345)||(10968-11060)
[»] scaffold0116 (1 HSPs)
scaffold0116 (252-345)||(42189-42281)
[»] scaffold0423 (1 HSPs)
scaffold0423 (269-345)||(10015-10091)
[»] scaffold0461 (2 HSPs)
scaffold0461 (252-310)||(2192-2250)
scaffold0461 (252-310)||(9128-9186)
[»] scaffold0124 (1 HSPs)
scaffold0124 (252-310)||(40334-40392)
[»] scaffold0386 (1 HSPs)
scaffold0386 (238-287)||(15861-15910)
[»] scaffold0334 (1 HSPs)
scaffold0334 (280-345)||(3066-3131)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 25187090 - 25186763
Alignment:
Q  18 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25187090 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttcta 25186991  T
Q  118 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 217  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25186990 tggctttctacaaatgttgttcctattgcttttagtttccatgactggtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 25186891  T
Q  218 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 317  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  25186890 gtggaggcaacctttgatttttggggccattttcttgtaacagatattgtgcgattcatcacttttagcacgccttgtgcggggtgaattactgatcgtt 25186791  T
Q  318 tgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||| ||||||||||||||    
T  25186790 tgagcaatatattccatttttatttgtt 25186763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 14782076 - 14781983
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||| ||  || ||||||||||||||| |||||| |||||||    
T  14782076 ttgtaacagactttgggtgattcaccacttttagcacaccttgtgtggggtgaatctctcctcttttgagcaatatattccattttgatttgtt 14781983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 5675568 - 5675491
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| ||||||| ||||||||||||||||||||||||  || |||| |||||||||| |||||| |||||||    
T  5675568 gtgattcatcgcttttagtacaccttgtgcggggtgaatcacttctcttttgtgcaatatattccattttgatttgtt 5675491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 31848130 - 31848054
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||| |||||| |||||||    
T  31848130 gtgattcatcacttttagcacaccttgtgcggggtgaatcactttgcttttgagc-atttattccattttgatttgtt 31848054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 18489749 - 18489813
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||| |||||||    
T  18489749 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttgtt 18489813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 4103160 - 4103091
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |   ||||||||||||||| ||||||    
T  4103160 gtgattcatcgcttttagcacgccttgtgcggggtgaatcactttcattttgagcaatatattccatttt 4103091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 16477691 - 16477626
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |||||||    
T  16477691 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 16477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 5195533 - 5195627
Alignment:
Q  250 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||| | || |||| ||||||||||||||||||||||| |||||||||||| |||| |   | ||||||| |||||||||||||| |||||||    
T  5195533 tcttgtatctgacattgggtgattcatcacttttagcacacattgtgcggggtggatcattccgcttttgagc-atatatttcattttgatttgtt 5195627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 9756472 - 9756567
Alignment:
Q  251 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttc-gtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| || |||| ||| |||||||||||||||||||||||||||| |||||||||  | |  |||||||||| |||| |||||| |||||||    
T  9756472 cttgtaactgacattgggtgtttcatcacttttagcacaccttgtgcggagtgaatcaccttactttttgagcaatttattccattttaatttgtt 9756567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 2854186 - 2854115
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| ||||    
T  2854186 gattcatca-ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgattt 2854115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 12607317 - 12607242
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgt 344  Q
    |||||| ||||||||||||||||||||||| |||||||||||| | | ||||| |||| |||| |||||| ||||||    
T  12607317 gtgatttatcacttttagcacaccttgtgc-gggtgaatcactctgcctttgaacaatttattccattttgatttgt 12607242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5195306 - 5195363
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcct 78  Q
    |||||||||||||||||||||||||||| || |||| | ||||||||| || ||||||    
T  5195306 ttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcggttattgatcct 5195363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 10286058 - 10286150
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||  || ||||||||||| | |||||||||||||||||||||||||   |  |  |||||||||||||||||||| | |||||||    
T  10286058 ttgtaacagattctgggtgattcatca-tattagcacaccttgtgcggggtgaatttatccttctttgagcaatatatttcattctgatttgtt 10286150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 29362314 - 29362399
Alignment:
Q  256 aacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcg-tttgagcaatatatttcatttttattt 342  Q
    |||||||||||  |||||||||||| |||||||| ||||||  ||||||||||   |||| ||||||| |||||||||||||| ||||    
T  29362314 aacagatattggatgattcatcactcttagcacatcttgtgttgggtgaatca--attcgttttgagctatatatttcattttgattt 29362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 9756232 - 9756290
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctc 79  Q
    |||| ||||||||||||||   |||||||||||||||| ||||||||| || |||||||    
T  9756232 ttggacaatttggaaggagcaaaacaaccgtgtctttaaaaatgcggttattgatcctc 9756290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 31794737 - 31794673
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| ||||||||||||||| ||| |   |||||| |||||||| |||||| |||||||    
T  31794737 tttagcacactttgtgcggggtgaattactctgtttttgagtaatatattccattttgatttgtt 31794673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 42453391 - 42453715
Alignment:
Q  18 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||    
T  42453391 ttcttgggcaatgtggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatccttgaaaaagtaaagtgtaattcttttcta 42453490  T
Q  118 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttg 217  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||   |||||||||||||    
T  42453491 tggctttctacaaatgttgttcctattgcttttagtttccatgactggtggaggcatccgttgttatgtatgggtgtcctgtaa---tgttttatttttg 42453587  T
Q  218 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42453588 gtggaggcaacctttggtttttggtgtcattttcttgtaacagatattgtatgattcatcacttttagcacaccttatgcggggtgaatcactgttcgtt 42453687  T
Q  318 tgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||| ||||||||||||||    
T  42453688 tgagcaatatattccatttttatttgtt 42453715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 14241281 - 14241371
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  14241281 ttgtaacagatattgtgtgattcatcacttttagcacatcttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgattt 14241371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 41242255 - 41242163
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||    
T  41242255 tgtaacagatatctagtgattcatcaattttagcacaccttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 41242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 22681518 - 22681441
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  22681518 gtgattcatcgtttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 22681441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 6459080 - 6459171
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||| |||| |||| |||||||||| |||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  6459080 tgtatcagacattgagtgattcatcgcttttagcacac-ttgtgcagggtgaatcacttttcttttgagcaatatatttcattttgatttgtt 6459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 17263375 - 17263465
Alignment:
Q  251 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||||| |||| |||| ||||||||| |||||| ||||    
T  17263375 cttgtaacagatattgggtgattcatctcttttagcacaccttgtacagggtgaatcacttttcg-ttgaacaatatattccattttgattt 17263465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 7567037 - 7566944
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||||||  || ||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||||| |||||||    
T  7567037 ttgtaacagactttgagtgatttgtcgcttttagcacaccttatgcggggtgaatcatttttcctttgagcaatatattccattttgatttgtt 7566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 8752472 - 8752565
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||| ||| || ||||||||||||||||||||||||||||||| ||||   | ||||||| ||||| |||||||| |||||||    
T  8752472 ttgtaacaaatattgagtgttttatcacttttagcacaccttgtgcggggtgaaacacttcgcttttgagctatataattcattttgatttgtt 8752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 13428041 - 13427957
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    ||||||||||  ||| ||||||||||||||| | ||||||||||| ||||||||||||  ||| ||||||||||||||||||||||    
T  13428041 ttgtaacagacgttgggtgattcatcactttaa-cacaccttgtgtggggtgaatcacctttcttttgagcaatatatttcatttt 13427957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 21120570 - 21120662
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||| ||||||||  | | ||||||||||||||| |||||| |||||||    
T  21120570 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttgtt 21120662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 32215672 - 32215580
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||||    
T  32215672 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 32215580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 38889910 - 38890002
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||| ||||||||||| || |||||||||||||||||||||||  ||| |||||||||||||||  ||||| |||||||    
T  38889910 ttgtaacagacgttgggtgtttcatcacttt-agtacaccttgtgcggggtgaatcacctttcttttgagcaatatattctattttaatttgtt 38890002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 3091969 - 3092045
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 329  Q
    ||||||||||||||  ||||||||||||||| || ||||||| ||| |||||||||||| | | ||||||||||||||    
T  3091969 ttgtaacagatattaggtgattcatcacttt-agtacaccttatgcagggtgaatcactttgcttttgagcaatatat 3092045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 20398850 - 20398942
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||   ||||||| |||||| ||||||  |||| |||||||||||||| | | |||||||||||||||||||||| |||||||    
T  20398850 ttgtaacaaatattagatgattcaccacttt-agcacattttgtacggggtgaatcactctgcttttgagcaatatatttcattttgatttgtt 20398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 38651280 - 38651368
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    ||||||||| |||  ||||||||||||||| |||| ||||| |||||||||||||||| | | ||||| ||||||||| |||||| ||||    
T  38651280 tgtaacagacattaggtgattcatcacttt-agcataccttatgcggggtgaatcactatgcttttgaacaatatattccattttgattt 38651368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 43656110 - 43656201
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||| ||||||||   |||||||||||||| ||||||||||||||||| ||||||||| | | |||||| |||||||| |||||| |||||||    
T  43656110 ttgtatcagatattagatgattcatcacttt-agcacaccttgtgcgggatgaatcact-tacttttgagtaatatattccattttaatttgtt 43656201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 22358788 - 22358716
Alignment:
Q  251 cttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagca 323  Q
    |||||||| || |||| |||||||||  ||||||||||||||| |||||||||||||||| | | ||||||||    
T  22358788 cttgtaactgacattgggtgattcattgcttttagcacaccttatgcggggtgaatcactttgcttttgagca 22358716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 45140197 - 45140133
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||||  |||||| |||||||    
T  45140197 tttagcacaccttgtgcggggtgaatcacctttcttttgaacaatatatcccattttaatttgtt 45140133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 29802780 - 29802845
Alignment:
Q  264 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 330  Q
    |||||||||||| ||||||||| |||| ||||||||||| ||||||| || ||||||| ||||||||    
T  29802780 ttgtgtgattcaccacttttagtacac-ttgtgcggggtaaatcacttttggtttgagtaatatatt 29802845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 644773 - 644884
Alignment:
Q  24 ggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatggctt 123  Q
    |||||||||||||||||| |||||| || | || | ||||||||| || ||||||  ||  ||  |||||||||| ||||  || |||||||||||||||    
T  644773 ggcaatttggaaggagagaaacaactgtattttcaaaaatgcggttattgatcctttcagtattgttgaaagagtgaagctgaactcttttttatggctt 644872  T
Q  124 tctacaaatgtt 135  Q
    ||| | ||||||    
T  644873 tcttcgaatgtt 644884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 8752221 - 8752283
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaa 83  Q
    ||||||||||||||| ||||| |||||||| ||||| ||| | ||||| || |||||||||||    
T  8752221 ttgggcaatttggaaagagagaaacaaccgagtcttcacataagcggttattgatcctcacaa 8752283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 17263147 - 17263209
Alignment:
Q  20 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcaca 82  Q
    |||||||||| |||||||| || |||||| |||| || | ||||||||| |||||||||||||    
T  17263147 cttgggcaatatggaaggatagaaacaactgtgtattaaaaaatgcggtaatcgatcctcaca 17263209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 13778314 - 13778245
Alignment:
Q  269 tgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcattttt 338  Q
    ||||||| || |||||||||||||| |||||| |||||   |  || |||||||||||||||||||||||    
T  13778314 tgattcaccatttttagcacaccttatgcgggatgaatacttcatcctttgagcaatatatttcattttt 13778245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 27294256 - 27294295
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcact 310  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  27294256 gattcatca-ttttagcacaccttgtgtggggtgaatcact 27294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 17607401 - 17607729
Alignment:
Q  18 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattctttttta 117  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||| | |||||| ||||||| |||||||||||||    
T  17607401 ttcttgggcaatttggaaggtgaggaacaaccatgtctttacaaatgcggtcattgatccttacaacataactgaaagtgtaaagcctaattctttttta 17607500  T
Q  118 tggctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgtt--ttatttt 215  Q
    |||||||||||||||||||||| |||||| ||  | || ||||| | |||||||||||||||||||||||||| |||| |||||| || ||  ||  |||    
T  17607501 tggctttctacaaatgttgttcctattgccttttgctttcatgattggtggaggcatccgttgttatgtatggatgtcatgtaat-ttcttaatttattt 17607599  T
Q  216 tggtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcg 315  Q
      ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||    
T  17607600 cagtggaggcaacctttggtttttggtgccatgatcttgtaacagatattgtgtgattcatcacttttaacacaccttgtgcgaggtgaatcactgtccg 17607699  T
Q  316 tttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||| ||||||||||||||    
T  17607700 tttgagcaatatattccatttttatttgtt 17607729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 12915742 - 12915835
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||| ||||| ||| ||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  12915742 ttgtatcagattttgcgtgattcatcagttttaacacaccttgtgtggggtgaatcacttctcgtttgagcaatatatttcattttgatttgtt 12915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 45701280 - 45701188
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| ||| ||| ||||||||||| |||||| |||||||    
T  45701280 tgtaacagacattgagtgattcatcgcttttagcacaccttgtgctgggtgaatcacttttcttttaagcaatatattccattttgatttgtt 45701188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 2220187 - 2220097
Alignment:
Q  255 taacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||| |||||| ||||||||||||||||||||||| |||||  | ||||||||||| ||||||||||||||||| | |||||| |||||||    
T  2220187 taacggatattatgtgattcatcacttttagcacatcttgtatgaggtgaatcacttttcgtttgagcaatataatccattttgatttgtt 2220097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 1206420 - 1206513
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||| ||||| ||| |||||||| |||||||||||| |||||||||||||||||||   | | |||||||||||||||||||||| |||||||    
T  1206420 ttgtatcagattttgagtgattcaccacttttagcacgccttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttgtt 1206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 42184089 - 42184170
Alignment:
Q  264 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||| | |||||||    
T  42184089 ttgtatgattcaccacttttagcacatcttgtgcggggtgaatcactgttggtttgagtaatatattccattatgatttgtt 42184170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 28543749 - 28543851
Alignment:
Q  243 gccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    ||||| || ||||||||||| ||| |||||||| |||||||||||| ||||||  || |||||||||| |  |||||||||||||||| |||||| ||||    
T  28543749 gccatgtttttgtaacagattttgagtgattcaccacttttagcacgccttgtatggagtgaatcactttcggtttgagcaatatattccattttaattt 28543848  T
Q  343 gtt 345  Q
    |||    
T  28543849 gtt 28543851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 3376120 - 3376211
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||  ||| ||||||||||  ||||||||||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||    
T  3376120 tgtaacagactttgagtgattcatcg-ttttagcacaccttgtgcggggtgaatcactcttcttttgagtaatatattctattttgatttgtt 3376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 30515876 - 30515782
Alignment:
Q  250 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||| | || |||| |||||||||||||||||| ||||||||||||||||||||||||   | ||||||| ||||||| |||||| |||||||    
T  30515876 tcttgtacctgacattgggtgattcatcacttttagtacaccttgtgcggggtgaatcactccgcttttgagc-atatattacattttgatttgtt 30515782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 10005232 - 10005324
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||| ||| | | ||||| ||||||||||||| || |||||||    
T  10005232 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaataactctgcctttgaacaatatatttcatattgatttgtt 10005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 28210070 - 28209993
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || |||   |||||||||| |||||| |||||||    
T  28210070 gtgagtcatcacttttagcacaccttgtgcggggtgattcacttttggttgttgcaatatattccattttgatttgtt 28209993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 41647219 - 41647138
Alignment:
Q  264 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||| |||||| ||||||||||||||  ||||||||||| |  ||||||| |||||||| |||||| |||||||    
T  41647219 ttgtgtgattcaccactttcagcacaccttgtgcaaggtgaatcactttcggtttgagtaatatattgcattttaatttgtt 41647138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 45468243 - 45468150
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacacc-ttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||| ||| |||| |||||||||| ||||||||||||| || ||||| |||||||||| ||| ||||| ||||||||| |||||| |||||||    
T  45468243 tgtaaaagacattgagtgattcatcgcttttagcacacctttatgcggagtgaatcacttttcttttgaacaatatattccattttgatttgtt 45468150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 3203243 - 3203328
Alignment:
Q  261 atattgtgtgattcatcacttttagcacaccttgtgcgg-ggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||||| |||   ||||||||||||| |||||||||||  | ||||||||||||||  ||||||| |||||||    
T  3203243 atattgtgtgattcatcacctttttaacaccttgtgcggaggtgaatcacttcttgtttgagcaatataactcattttgatttgtt 3203328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 33006781 - 33006689
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| |||||||  ||||||||||||||| || ||||||||| || ||||||||||| | | |||||| ||||||||| ||||| |||||||    
T  33006781 ttgtaagagatattaggtgattcatcacttt-aggacaccttgtacgaggtgaatcactttacttttgagtaatatattttattttgatttgtt 33006689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 39994657 - 39994749
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||| |||||||||||||||| |||||||||||||| |   |||||| |||||||| |||||| |||||||    
T  39994657 ttgtaacagatattagaggattcatca-ttttagcacaccttgtacggggtgaatcactatatttttgagtaatatattccattttgatttgtt 39994749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 26404989 - 26405077
Alignment:
Q  258 cagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||| || |||||||||||||  ||| ||||| | ||||||| |||||||||| |||||||| |||||| |||||||    
T  26404989 cagatattatgtgatttcaccacttttagcacattttgggcgggataaatcacttttcgtttgagaaatatattccattttgatttgtt 26405077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 11123652 - 11123705
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 306  Q
    ||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||    
T  11123652 ttgtaacagacgttgggtgattcatca-ttttagcacaccttgtgcggggtgaat 11123705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 42183810 - 42183888
Alignment:
Q  20 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagt 98  Q
    |||||| ||| |||||||| |||||||| |||||||| | |||||| || | ||||||||||||  |||||||||||||    
T  42183810 cttgggtaatatggaaggaaaggaacaatcgtgtcttcaaaaatgcagttaccgatcctcacaatctcattgaaagagt 42183888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 32603304 - 32603388
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    |||||||||| |||| |||||||||||||||||| ||| ||| |  ||||||||||||| |   |||||| |||||||||||||||    
T  32603304 ttgtaacagacattgggtgattcatcacttttagtacatcttatatggggtgaatcact-tagctttgagaaatatatttcatttt 32603388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 26438353 - 26438410
Alignment:
Q  272 ttcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 330  Q
    ||||||||||| |||||||||||||| |||||||||||  ||| ||||| |||||||||    
T  26438353 ttcatcacttt-agcacaccttgtgcagggtgaatcacctttcttttgaacaatatatt 26438410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 28157716 - 28157780
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||| ||||||||| |||| ||||||  ||| ||| ||||||||||| |||||| |||||||    
T  28157716 tttagcaaaccttgtgcagggtaaatcacctttcttttaagcaatatattccattttaatttgtt 28157780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 345
Target Start/End: Complemental strand, 7677093 - 7676770
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 120  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||||    
T  7677093 ttgggtaatttggaaggcgaggaacaaccgtgtctttacaaatgcggccatcgatcctcacaacataactaaaagagtaaagcgtaattcttttttatgg 7676994  T
Q  121 ctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgttttatttttggtg 220  Q
    || || ||||||||||||| ||||||||| || || || || | ||||||||||||| |||||||||||| |||| |||||| |||||||| ||||||||    
T  7676993 ctctccacaaatgttgttcctattgcttttagctttcacgattggtggaggcatccgctgttatgtatggatgtcatgtaattttgtttta-ttttggtg 7676895  T
Q  221 gaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttga 320  Q
    ||||||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||||||| ||||  | ||| |||||| ||||||| | |||||    
T  7676894 gaggcaacctttgatttttggtgtcatgatcttgtaacagatattgtgtgattcatcacttttagtacacgatttgcagggtgattcactgtccatttga 7676795  T
Q  321 gcaatatatttcatttttatttgtt 345  Q
    |||||||||| ||||||||||||||    
T  7676794 gcaatatattccatttttatttgtt 7676770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 30188542 - 30188632
Alignment:
Q  255 taacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||  |||||||||||||||||||  |||||||||||||    
T  30188542 taacagattttgtgtgattcatcactcttagcacatctagtgcggggtgaatcacctttcgtttgagcaatatattctatttttatttgtt 30188632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 7638978 - 7638885
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||   |||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||||| |||||||    
T  7638978 ttgtaacagatatctagtgattcatcacttttagtacaccttatgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 7638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 7937443 - 7937535
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||||||||||||||| |||||||||||||| ||| |||||||| | | ||||||||||| ||| |||||| |||||||    
T  7937443 ttgtaacagactttgggtgattcatcacttt-agcacaccttgtgcagggggaatcactctgcctttgagcaatagattccattttgatttgtt 7937535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 21477833 - 21477741
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||||    
T  21477833 ttgtaacagatattagaggattcatca-ttttagcacaccttgtgcggggtgaatcactctgtctttgagtaatatattccattttgatttgtt 21477741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 344
Target Start/End: Original strand, 10752221 - 10752313
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgt 344  Q
    ||||||||||  ||| |||||||| |||||||| |||||||||| ||||||||||| || | | |||||||||||||||  ||||| ||||||    
T  10752221 ttgtaacagactttgggtgattcaccacttttaacacaccttgtacggggtgaatccctctacatttgagcaatatattctattttgatttgt 10752313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 10773250 - 10773314
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||  |||||| |||||||    
T  10773250 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 10773314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 16898626 - 16898718
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||   |||||||||||||| ||||||  |||||||| |||||||||| | | |||||||||||||| ||||||| |||||||    
T  16898626 ttgtaacatatattagatgattcatcacttt-agcacattttgtgcggagtgaatcactttgcttttgagcaatatatctcattttgatttgtt 16898718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 29685632 - 29685704
Alignment:
Q  273 tcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||  |||||||||||||||  ||||| |||||||    
T  29685632 tcatcacttttagtacatcttgtgcagggtgaatcactattattttgagcaatatattctattttgatttgtt 29685704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 19667558 - 19667499
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatat 327  Q
    |||||||||||||||||||| |||||||||||||||| | ||| | | ||||||||||||    
T  19667558 gtgattcatcacttttagcataccttgtgcggggtgattaactttgcttttgagcaatat 19667499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 12215524 - 12215563
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcact 310  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  12215524 gattcatca-ttttagcacaccttgtgcggggtgaatcact 12215563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 19667806 - 19667752
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgat 75  Q
    ||||| ||||||||||||||| ||||||  |||||||| ||||||||| ||||||    
T  19667806 ttgggaaatttggaaggagagaaacaactttgtctttaaaaatgcggttatcgat 19667752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 25280451 - 25280389
Alignment:
Q  283 tagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||| |||||||||||||||||| |  || |||||| |||||||| |||||| |||||||    
T  25280451 tagcacatcttgtgcggggtgaatcattcctcttttgagtaatatattccattttgatttgtt 25280389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 30045254 - 30045322
Alignment:
Q  276 tcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||| |||||| ||||  ||| ||||||||||||||  |||||| |||||||    
T  30045254 tcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttgatttgtt 30045322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 41748781 - 41748846
Alignment:
Q  280 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||  |||||||| |||  ||| ||||| ||||||||| |||||| |||||||    
T  41748781 ttttagcacaccttgtatggggtgaaccacctttcttttgaacaatatattccattttgatttgtt 41748846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 23256917 - 23257242
Alignment:
Q  20 cttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatg 119  Q
    |||||| |||||||||||| || |||||| |||||||| | |||||||| || |||  |||||||||| |||||| ||| ||||| ||||||||||||||    
T  23256917 cttgggaaatttggaaggatagaaacaacagtgtcttttccaatgcggttattgatattcacaacatccttgaaaaagtgaagcgcaattcttttttatg 23257016  T
Q  120 gctttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttgtttta--tttttg 217  Q
    | | ||| | ||| || |||  ||||||||   ||| ||||| | |||||| || ||  |  | |||||||||||| |||||| || ||||   ||||||    
T  23257017 gatctcttcgaatattattccaattgcttttgattttcatgattggtggagacacccacttctgtgtatgggtgtcatgtaattttctttttattttttg 23257116  T
Q  218 gtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtt 317  Q
    |||| |||| ||||||||||  |||||| | ||  |||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  23257117 gtggtggcatcctttggttt--ggtgccttgtttgtgtagcagatattgggtgattcatcggttttagcacaccttgtgcggggtgaatcacttttcgtt 23257214  T
Q  318 tgagcaatatatttcatttttatttgtt 345  Q
    ||| ||||||||| |||||| |||||||    
T  23257215 tgaacaatatattccattttgatttgtt 23257242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 37268317 - 37268410
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  37268317 ttgtaacagactttgagtgattcgtcacttttagcacaccttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 37268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 26397361 - 26397286
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  26397361 gattcatcatttttagcacaccttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 26397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 21269972 - 21269879
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||  |||||| |||||||    
T  21269972 ttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttgtt 21269879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 21271986 - 21271893
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||| ||| || ||||||| |||||||  |||||| |||||||    
T  21271986 ttgtaacatatattgagtaattcaccacttttagcacaccttgtgcggggtgaattacttttggtttgagtaatatataccattttgatttgtt 21271893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 38099554 - 38099646
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||| | || ||||||| |||||||| |||||| |||||||    
T  38099554 ttgtaatagatattgtgttattcatcactcttatcacaccttgtgcggggtgaatca-tttttgtttgagtaatatattccattttgatttgtt 38099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 40632713 - 40632648
Alignment:
Q  280 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  40632713 ttttagcacaccttatgcggggtgaatcactcttcttttgagcaatatatttcattttgatttgtt 40632648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 7124008 - 7123934
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    |||||||||||||||||||||||||| |||||| ||||||||| | | |||||| ||||||||||||||| ||||    
T  7124008 gtgattcatcacttttagcacaccttatgcgggttgaatcactttgcttttgagaaatatatttcattttgattt 7123934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 24251286 - 24251370
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    ||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||   | ||||| |||||||||| |||||    
T  24251286 tgtaacatacattgggtgattcatcacttttaacacaccttgtgcggggtgaatcacttagcttttgaacaatatattttatttt 24251370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 17945967 - 17945875
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||||    
T  17945967 ttgtaacagatattagaggattcatca-ttttagcacaccttgtgcggggtgaatcactctgtttttgagtaatatattccattttgatttgtt 17945875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 21825219 - 21825284
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |||||||    
T  21825219 tttagcacaccttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 21825284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 9194631 - 9194543
Alignment:
Q  257 acagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||| |||||||||| || ||||||| ||||||||||| ||||||||| | | ||  |||||||||||||||||| |||||||    
T  9194631 acagatcttgggtgattcatcgctcttagcacgccttgtgcgggatgaatcactctcctttaaagcaatatatttcattttgatttgtt 9194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 1585473 - 1585547
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||| |||||||||||| |||||||||||||| | | |||||||||||||||  ||||| |||||||    
T  1585473 gattcatcacttt-agcacaccttgtacggggtgaatcactctgcttttgagcaatatattcaattttgatttgtt 1585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 18149453 - 18149364
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    ||||| |||| |||| ||| |||| |||||| |||||||||||||||||||||| |||  | | |||||||||||||||||||||| ||||    
T  18149453 ttgtatcagacattgggtgtttcaccacttt-agcacaccttgtgcggggtgaaccaccttacttttgagcaatatatttcattttgattt 18149364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 39565366 - 39565450
Alignment:
Q  259 agatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| |||||||||||||||||| | ||||||| |||||||||| | ||| ||||||| ||||||| |||||| |||||||    
T  39565366 agatattgtgcgattcatcacttttagcaaatcttgtgc-gggtgaatcaattttcatttgagc-atatattccattttaatttgtt 39565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 345
Target Start/End: Complemental strand, 13390415 - 13390352
Alignment:
Q  282 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||||||||||  || ||||||| ||||||| |||||| |||||||    
T  13390415 ttagcacatcttgtgcggggtgaatcacttctcttttgagctatatattccattttgatttgtt 13390352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 33651254 - 33651312
Alignment:
Q  250 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatca 308  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||||| || |||||||    
T  33651254 tcttgtatctgatattgggtgattcatcacttttaacacaccttgtgcaggatgaatca 33651312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 15504881 - 15504973
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||| ||||| ||||||||||||||||||||||||| |   ||| || |||||||| |||||| |||||||    
T  15504881 ttgtaacagatattagaagattcatca-ttttaacacaccttgtgcggggtgaatcactctatttttaagtaatatattccattttgatttgtt 15504973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 9194862 - 9194758
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 120  Q
    |||| |||||||||||||||| |||||| || |||| | ||||||||| || ||||||||||| ||  | ||||  || ||||  ||||| |||||||||    
T  9194862 ttggacaatttggaaggagagaaacaactgtatcttcaaaaatgcggtaattgatcctcacaatatagtcgaaaaggtgaagctgaattcctttttatgg 9194763  T
Q  121 ctttc 125  Q
    |||||    
T  9194762 ctttc 9194758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 23264175 - 23264111
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||||||||||| ||||  ||  |||||||||||||  |||||| |||||||    
T  23264175 tttagcacaccttgtgcggggtgaaacactactctattgagcaatatatcccattttgatttgtt 23264111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 17696107 - 17696034
Alignment:
Q  271 attcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||||||||||| ||||||||| |   |||||| ||||||||  ||||| |||||||    
T  17696107 attcatca-ttttagcacaccttgtgcgggatgaatcactctgtttttgagtaatatattctattttgatttgtt 17696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 12824371 - 12824338
Alignment:
Q  312 ttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||| ||||||||||||||||||||||||    
T  12824371 ttcgtttgaacaatatatttcatttttatttgtt 12824338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 16120013 - 16120085
Alignment:
Q  272 ttcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||| |||||||||||||||||||||| |||   ||  ||||| ||||||| ||||||| |||||||    
T  16120013 ttcatcacttt-agcacaccttgtgcggggtgaaacaccactctattgagtaatatatctcattttgatttgtt 16120085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 20251576 - 20251511
Alignment:
Q  280 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||| ||||||| |||   || |||| |||||||||| |||||| |||||||    
T  20251576 ttttagcacaccttgtgcagggtgaaacacctctcttttgtgcaatatattccattttgatttgtt 20251511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 37414705 - 37414637
Alignment:
Q  276 tcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||| |||||| ||||  ||| ||||||||||||||  |||||| |||||||    
T  37414705 tcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttaatttgtt 37414637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 345
Target Start/End: Complemental strand, 46191356 - 46191195
Alignment:
Q  184 tgtatgggtgtcttgtaatgttg-ttttattttt-ggtggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcactt 281  Q
    |||||||||||| |||||| ||| |||||||||| ||||| |||| ||||||||||  |||||| |||||||||||||||||||  |||| |||||| ||    
T  46191356 tgtatgggtgtcatgtaattttggttttattttttggtggtggcatcctttggttt--ggtgcctttttcttgtaacagatattcagtgagtcatcattt 46191259  T
Q  282 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  46191258 ttagcacacattgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 46191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 13159792 - 13159699
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  13159792 ttgtaacatatattttgtgattcaccacttttagcacactttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 13159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 44546612 - 44546705
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  44546612 ttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 44546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 135895 - 135821
Alignment:
Q  270 gattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  135895 gattcatcactcttagcacaccttgtacggggtgaatcact-ttcgtttgagcaatatattccattttgatttgtt 135821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 344
Target Start/End: Complemental strand, 20177484 - 20177379
Alignment:
Q  238 ttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    |||||||||| || ||||| |||||||| |||||||||||||||||| || | |||||||| ||||||||||| |||| ||||||||||||||  |||||    
T  20177484 ttggtgccatgtt-ttgtatcagatattatgtgattcatcacttttaacatatcttgtgcgaggtgaatcacttttcgattgagcaatatattcgatttt 20177386  T
Q  338 tatttgt 344  Q
     ||||||    
T  20177385 gatttgt 20177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 55284947 - 55284841
Alignment:
Q  240 ggtgccattttctt-gtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcattttt 338  Q
    |||||||||||||| ||||||||| ||   || |||| ||||||||||||||||| |||||||||||||||| ||  ||| |||||||||||| |||||     
T  55284947 ggtgccattttctttgtaacagatttttaatgtttcaccacttttagcacaccttatgcggggtgaatcactattattttcagcaatatattttattttg 55284848  T
Q  339 atttgtt 345  Q
    |||||||    
T  55284847 atttgtt 55284841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 1463319 - 1463412
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| |||||||||||||||||||||||||| |||||||||||| ||| | | |||||||||| |||  |||||| |||||||    
T  1463319 ttgtaacagactttgagtgattcatcacttttagcacaccttatgcggggtgaatgactttgcctttgagcaatttataccattttgatttgtt 1463412  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 17186270 - 17186347
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||| ||||||||||||||| |||||| |||||||    
T  17186270 gtgattcatcgtttttagcataccttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttgtt 17186347  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 21141909 - 21142002
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||  |||||||||||||| |||||||| ||  |||||||||||||||||||||  | ||||||||||||||||  ||||| |||||||    
T  21141909 ttgtaacaattattgtgtgattcaccacttttaacatgccttgtgcggggtgaatcactcctggtttgagcaatatattctattttgatttgtt 21142002  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 42396789 - 42396697
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||||||||||| ||||||  ||| ||||||||||||||| |||||| |||||||    
T  42396789 ttgtaacagacattgggtgtttcatcacttt-agcataccttgtgcggggtaaatcacctttcttttgagcaatatattccattttaatttgtt 42396697  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 39868311 - 39868402
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||  ||| ||||||||||  ||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||||| |||||||    
T  39868311 tgtaacagacgttgagtgattcatcg-ttttagcacaccttgtgcggggtgagtcactcttcttttcagcaatatattccattttgatttgtt 39868402  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 16736246 - 16736169
Alignment:
Q  269 tgattcatcacttttagcacaccttgtgcggggtgaatca-ctgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||||||| ||| || |||||||||||  | ||||||||||||||||| |||||||| |||||||    
T  16736246 tgattcatcacttttagcacatcttatgtggggtgaatcattttttcgtttgagcaatataattcattttgatttgtt 16736169  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 26893331 - 26893423
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| |||| ||| ||||||||||||||| |||||||||||||| |||||||| ||  ||| ||||||||||| ||| |||||| |||||||    
T  26893331 ttgtaatagatgttgggtgattcatcacttt-agcacaccttgtgcagggtgaattacctttcttttgagcaatacattccattttgatttgtt 26893423  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 28709150 - 28709242
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||| |||||||||  ||||||||||| || |||||| |||||||||||||||||| |  || |||||| ||||||||||||||| |||||||    
T  28709150 ttgtatcagatattggatgattcatcacgtt-agcacatcttgtgcggggtgaatcattcctcttttgagtaatatatttcattttgatttgtt 28709242  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 21141678 - 21141777
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatgg 120  Q
    ||||||||| |||||||| | ||||||||| ||||| | ||||| ||| | ||||||||||||||||||||||| ||| ||||  ||||| || ||||||    
T  21141678 ttgggcaatatggaaggaaaagaacaaccgcgtcttgaaaaatgtggtaaccgatcctcacaacatcattgaaaaagttaagctaaattccttcttatgg 21141777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 17712765 - 17712673
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||| |   | |||| |||||||| |||||| |||||||    
T  17712765 ttgtaacagatattagaggattcatcacttt-agcacaccttgtgcggggtgaatcactctgtttctgagtaatatattccattttgatttgtt 17712673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 22322490 - 22322413
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| | | ||||| |||| |||| |||||| |||||||    
T  22322490 gtgattcatcatttttagcacaccttatgcgggatgaatcactttgcttttgaacaatttattccattttgatttgtt 22322413  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 24010498 - 24010575
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||| |||||||||  ||||||||||||||||||||| ||| ||||| |||||||||  ||||| |||||||    
T  24010498 gtgatttatcgcttttagcatgccttgtgcggggtgaatcactcttcatttgaacaatatattcaattttgatttgtt 24010575  T

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Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 28740816 - 28740873
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcac 309  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||    
T  28740816 ttgtaacagatattatgtgaatcatcacttttggcacatcttgtgctgggtgaatcac 28740873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 52762930 - 52763006
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||| | |||||||||| || ||||||||||| | | ||||||||||||||| |||||| |||||||    
T  52762930 gtgattcatcactttaa-cacaccttgtacgaggtgaatcactatacttttgagcaatatattccattttaatttgtt 52763006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 135943 - 135895
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggg 300  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  135943 ttgtagcagatattgtgtgattcatcactcttagcacaccttgtacggg 135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 34684017 - 34684120
Alignment:
Q  242 tgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatt 341  Q
    |||||| ||||||||||| | ||||||| ||||| |||||||| |||||||||| | ||||||||  || || |  ||| |||||| ||||||||| |||    
T  34684017 tgccatcttcttgtaacaaacattgtgtaattcaccacttttaacacaccttgtacagggtgaattgctcttggcatgaacaatatttttcattttgatt 34684116  T
Q  342 tgtt 345  Q
    ||||    
T  34684117 tgtt 34684120  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 7272679 - 7272745
Alignment:
Q  264 ttgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatt 330  Q
    |||||||||||| |||| |||||||||||| | |||||||||||||| ||  |||||| ||||||||    
T  7272679 ttgtgtgattcaccactgttagcacaccttatacggggtgaatcactattaatttgagtaatatatt 7272745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 11821501 - 11821567
Alignment:
Q  272 ttcatcacttttagcacaccttgtgc-ggggtgaatcactgttcgtttgagcaatatatttcatttt 337  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||  ||||||||| ||||| |||||    
T  11821501 ttcatcgcttttagcacaccttgtgcgggggtgaatcactcttctattgagcaatgtattttatttt 11821567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 14546443 - 14546389
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 306  Q
    |||||| |||||||| || ||||| ||||||||||||||||| ||||||||||||    
T  14546443 ttgtaatagatattgagtaattcaccacttttagcacaccttatgcggggtgaat 14546389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 36825871 - 36825778
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcac-tgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||| |||||| ||| ||||||||||||||| | |||||||| | ||||||||||||| | |||||  |||||||||||| |||||| |||||||    
T  36825871 ttgtcacagattttgggtgattcatcactttaa-cacaccttatacggggtgaatcaccttttcgtgcgagcaatatattccattttgatttgtt 36825778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 48782602 - 48782508
Alignment:
Q  252 ttgtaacagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  |||| ||||| || ||| ||||| |||||||||| ||||||||||| | |  ||||||||||| ||||||||||| |||||||    
T  48782602 ttgtaacagagtttgtctgatttcaccacgtttagtacaccttgtgtggggtgaatcaatttcggtttgagcaatttatttcattttgatttgtt 48782508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 37013995 - 37013918
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| ||||||||| ||||| || |||||||| || | | | ||||||||||||||| |||||| |||||||    
T  37013995 gtgattcatcgcttttagcataccttatgtggggtgaaccattctccttttgagcaatatattccattttgatttgtt 37013918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 14453986 - 14453918
Alignment:
Q  276 tcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| ||||||||||||| |||||| ||||  ||| ||||||||||||||  |||||| |||||||    
T  14453986 tcactttt-gcacaccttgtgcagggtgattcacctttcttttgagcaatatatcccattttgatttgtt 14453918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 41007234 - 41007311
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||| ||||||||||  ||| || ||| ||||||||| ||| | |||| ||||||||||||||| |||||||    
T  41007234 gtgattgatcgcttttagcacgtcttatgtgggatgaatcacttttcatctgagtaatatatttcattttgatttgtt 41007311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 18430508 - 18430433
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgt 344  Q
    ||||||||||||||||| |||| ||||||| |||||||||||  | |  ||||||||||||||  ||||| ||||||    
T  18430508 gtgattcatcacttttaacacatcttgtgc-gggtgaatcaccttgctcttgagcaatatattcaattttgatttgt 18430433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 30036606 - 30036697
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| ||| |||||||| | |||| |||||||||| ||| ||||||||   |  || ||||||||||||||| |||||| |||||||    
T  30036606 tgtaacagattttgggtgattcacctcttt-agcacaccttatgcagggtgaattgttcctcatttgagcaatatattccattttgatttgtt 30036697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 12527263 - 12526941
Alignment:
Q  22 tgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaacatcattgaaagagtaaagcgtaattcttttttatggc 121  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||| ||||||  |||||||||| |||||| ||| ||||| ||||| |||||||||     
T  12527263 tgggcaatttggaaggatagaaacaactgtgtctttaccaatgcggttatcgatattcacaacatccttgaaaaagtgaagcgcaattc-tttttatgga 12527165  T
Q  122 tttctacaaatgttgttcatattgctttcagtttccatgactagtggaggcatccgttgttatgtatgggtgtcttgtaatgttg-ttttatt-tttggt 219  Q
    ||||| | ||| || |||  ||||||||   ||| ||||| | || ||| || ||  |  | |||||||||||| |||||| ||| ||||||| ||||||    
T  12527164 tttcttctaatattattccaattgcttttgattttcatgattggtcgagacacccacttctgtgtatgggtgtcatgtaattttgtttttattatttggt 12527065  T
Q  220 ggaggcaacctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttg 319  Q
    || |||| |||||||  ||||||||| | || ||||| || |||| | |||||| |||| |||| ||| ||||| | | || | ||||||| ||| ||||    
T  12527064 ggtggcatcctttgg--tttggtgccttgtttttgtatcaaatatcgggtgatttatcaatttttgcaaaccttatacaggattaatcacttttcatttg 12526967  T
Q  320 agcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||| |||||||    
T  12526966 agcaatatatttcattttgatttgtt 12526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 10349521 - 10349614
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||||| |||||||    
T  10349521 ttgtaacagatattttgtgattcatcacttttagcacaccttgtgcagggtgaatcactttcagtttgagcaatatattccattttgatttgtt 10349614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 20819680 - 20819603
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  |||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||| |||||||    
T  20819680 gtgattcatcgtttttagcacaccttgtgctgggtgaatcacttttcttttgagcaatatattccattttgatttgtt 20819603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 39581405 - 39581483
Alignment:
Q  252 ttgtaacagatattgtgtgatt-catcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 329  Q
    ||||| |||||||| ||||||| |||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||    
T  39581405 ttgtatcagatattttgtgatttcatcacttttagcatatcttgtgcggggtgaatcactattcgtttgaacaatatat 39581483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 24509393 - 24509317
Alignment:
Q  268 gtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| |||||||    
T  24509393 gtgattcatcgtttttagcacaccttgtgcggg-tgaatcactcttcttttgagcaatatattccattttgatttgtt 24509317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 7637702 - 7637638
Alignment:
Q  281 tttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||  |||||| |||||||    
T  7637702 tttagcacaccttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 7637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 12396417 - 12396356
Alignment:
Q  260 gatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagca 323  Q
    |||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  12396417 gatattgtatgattcatcactcttagcacaccttgtgc-gggtgaatcact-ttcgtttgagca 12396356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 24308369 - 24308277
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||| ||| |||||||| || |||||| ||||||||||||||||||||   |  |  |||||||||||||||||||||| |||||||    
T  24308369 ttgtaacagattttgggtgattcacca-ttttagtacaccttgtgcggggtgaatttatccttctttgagcaatatatttcattttgatttgtt 24308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 33567477 - 33567412
Alignment:
Q  18 ttcttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctcacaa 83  Q
    |||||||||||| |||||||| || |||||||||| ||| | ||||||||| ||||||||||||||    
T  33567477 ttcttgggcaatatggaaggatagaaacaaccgtgccttaaaaaatgcggtaatcgatcctcacaa 33567412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 1870486 - 1870560
Alignment:
Q  269 tgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttg 343  Q
    ||||||| || ||||||||||| ||||||| |||||||| ||  || ||||||||||||||||||| || |||||    
T  1870486 tgattcaccatttttagcacacgttgtgcgtggtgaatctcttctcctttgagcaatatatttcatcttgatttg 1870560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 24308594 - 24308541
Alignment:
Q  27 aatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctca 80  Q
    |||||||||||| || |||||||||||||| | |||||| || |||||||||||    
T  24308594 aatttggaaggatagaaacaaccgtgtcttcaaaaatgctgtaatcgatcctca 24308541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 33855542 - 33855469
Alignment:
Q  272 ttcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||||||||||||| | |||| |||||| |  | | | |||||||||||||||||||||| |||||||    
T  33855542 ttcatcgcttttagcacaccctttgcgaggtgaagctttctccttttgagcaatatatttcattttgatttgtt 33855469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 33925380 - 33925453
Alignment:
Q  272 ttcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||| ||||||||||||| | |||| |||||| |  | | | |||||||||||||||||||||| |||||||    
T  33925380 ttcatcgcttttagcacaccctttgcgaggtgaagctttctccttttgagcaatatatttcattttgatttgtt 33925453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 17936326 - 17936419
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||  ||| ||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||    
T  17936326 ttgtaacagactttgagtgattcgtcgcttttagcacaccttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttgtt 17936419  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 15172800 - 15172892
Alignment:
Q  253 tgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||| |||||| |||||||    
T  15172800 tgtaacagatattatgtgattcatcacttttagcacatattgttcggggtgaatcactcttcgtttgagaaatatattccattttaatttgtt 15172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 39143298 - 39143374
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatat 329  Q
    ||||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||| | | ||||||||||||||    
T  39143298 ttgtaacagatattaggtgattcatcacttt-accacaccttgtgcggggtgaatcactttgcttttgagcaatatat 39143374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 15353331 - 15353425
Alignment:
Q  250 tcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||| | || |||| |||||||||||||||| | |||||||||||||| |||||||||   | ||||||| |||||||||||||| |||||||    
T  15353331 tcttgtatctgacattgggtgattcatcacttttggtacaccttgtgcgggatgaatcactccgcttttgagc-atatatttcattttgatttgtt 15353425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 29934709 - 29934772
Alignment:
Q  282 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||||||||||||||||   || ||||||||||||||| |||||| |||||||    
T  29934709 ttagcacaccttgtgcggggtgaatcacctctcttttgagcaatatattccattttgatttgtt 29934772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 39919412 - 39919336
Alignment:
Q  229 ctttggtttttggtgccattttcttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaat 306  Q
    |||||||||| ||||||  ||  |||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||    
T  39919412 ctttggttttaggtgcctgttgtttgtaacagacattgggtgattcatca-ttttagcacaccttgtgcagggtgaat 39919336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 21313795 - 21313872
Alignment:
Q  269 tgattcatcacttttagcacaccttgtgcggggtgaatca--ctgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||  |||||| |||||||| |||||| |||||||    
T  21313795 tgattcatca-ttttagcacaccttgtacggggtgaatcattctgtttttttgagtaatatattccattttgatttgtt 21313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 9018047 - 9018144
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcgggg-----tgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||  |||||||||||| ||||||||||||| |||| ||     ||||||||| | | ||||||||||||||| |||||| |||||||    
T  9018047 ttgtaacagatattaggtgattcatcac-tttagcacaccttatgcgaggtgaattgaatcactttgcttttgagcaatatattccattttaatttgtt 9018144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 1219198 - 1219261
Alignment:
Q  282 ttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||| |||||||||||||||||| |  |  |||||| ||||||||||||||| |||||||    
T  1219198 ttagcacatcttgtgcggggtgaatcaattctattttgagtaatatatttcattttgatttgtt 1219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Complemental strand, 20877308 - 20877279
Alignment:
Q  276 tcacttttagcacaccttgtgcggggtgaa 305  Q
    ||||||||||||||||||||||||||||||    
T  20877308 tcacttttagcacaccttgtgcggggtgaa 20877279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 13368359 - 13368399
Alignment:
Q  27 aatttggaaggagaggaacaaccgtgtctttacaaatgcgg 67  Q
    |||||||||||| ||||||||||||||||||| || |||||    
T  13368359 aatttggaaggaaaggaacaaccgtgtctttaaaagtgcgg 13368399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 36135 - 36042
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |   ||| |||| |||||||||| |||||| |||||||    
T  36135 ttgtaacagatattttgtgattcatcacttttagcacatcttgtgcgggatgaatgatatttcatttgggcaatatattccattttgatttgtt 36042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 36367 - 36308
Alignment:
Q  21 ttgggcaatttggaaggagaggaacaaccgtgtctttacaaatgcggtcatcgatcctca 80  Q
    ||||||||| |||||||| || |||||||||||||| | |||| |||| |||||||||||    
T  36367 ttgggcaatatggaaggaaagaaacaaccgtgtcttaaaaaatacggtaatcgatcctca 36308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 922 - 861
Alignment:
Q  280 ttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttattt 342  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  922 ttttagcacac-ttgtgcggggtgaatcacttttcatttgagcaatatattccattttgattt 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 10968 - 11060
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||||||| | ||||||||||||||||||||||||| |   |||||| |||||||| |||||| |||||||    
T  10968 ttgtaacagatattagaggattcatcactttaa-cacaccttgtgcggggtgaatcactctctttttgagtaatatattccattttgatttgtt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 42281 - 42189
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    ||||||||||||||    ||||||||| |||||||||| |||||||||||||||||||| |   |||||| |||| |||||||||| |||||||    
T  42281 ttgtaacagatattagaggattcatca-ttttagcacatcttgtgcggggtgaatcactttgtttttgagtaataaatttcattttgatttgtt 42189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 10091 - 10015
Alignment:
Q  269 tgattcatcacttttagcacaccttgtgcggggtgaatca--ctgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||  |||||| |||||||| |||||| |||||||    
T  10091 tgattcatca-ttttagcacaccttgtgcggggtgaatcattctgtt-ttttgagtaatatattccattttgatttgtt 10015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 2192 - 2250
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 310  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  2192 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 2250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 9128 - 9186
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 310  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  9128 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 9186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 40392 - 40334
Alignment:
Q  252 ttgtaacagatattgtgtgattcatcacttttagcacaccttgtgcggggtgaatcact 310  Q
    ||||||||||  ||| |||| |||||| ||||||||||||||||||||| |||||||||    
T  40392 ttgtaacagactttgggtgaatcatcaattttagcacaccttgtgcgggatgaatcact 40334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 15861 - 15910
Alignment:
Q  238 ttggtgccattttcttgtaacagatattgtgtgattcatcacttttagca 287  Q
    |||||||||| | |||||||  ||||||||||||||||||||||||||||    
T  15861 ttggtgccatatccttgtaattgatattgtgtgattcatcacttttagca 15910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 3066 - 3131
Alignment:
Q  280 ttttagcacaccttgtgcggggtgaat-cactgttcgtttgagcaatatatttcatttttatttgtt 345  Q
    |||||||||||||||||||| |||||| || | ||| |||||||||||||||| ||||| |||||||    
T  3066 ttttagcacaccttgtgcggagtgaatgcattcttc-tttgagcaatatattttattttaatttgtt 3131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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