View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_3 (Length: 617)
Name: NF17836_high_3
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 7934725 - 7934977
Alignment:
| Q |
17 |
caatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagtt |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7934725 |
caatattcagtttcagttgaattgcagctttaacagtggtagtctactggctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagtt |
7934824 |
T |
|
| Q |
117 |
ttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattt |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
7934825 |
ctgatgagggctgcattattaaagagtaggcggataaaactgaaactcaaaa----aaaaaatgtgattgcttgttttacaaactcaaagtgagatattt |
7934920 |
T |
|
| Q |
217 |
tataggacaaactcaaagtgagagattatttgtggctatggttcctatggaaactgt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
7934921 |
tataggacaaactcaaagtgagagattatttgtggatatggttcctatggaacctgt |
7934977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 34578959 - 34578706
Alignment:
| Q |
17 |
caatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagtt |
116 |
Q |
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||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34578959 |
caatattcaatttcatttgaattgcagctttaacagtggtaatctactagctttggtggtgtattctaagatacaatttaaactcaaaggatcacaagtt |
34578860 |
T |
|
| Q |
117 |
ttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattt |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34578859 |
ttgatgagggctgcattattaaagagtaggcggataaaactgaaactcagaa---aaaaaaatgtgattgcttgttttacaaactcaaagtgagatattt |
34578763 |
T |
|
| Q |
217 |
tataggacaaactcaaagtgagagattatttgtggctatggttcctatggaaactgt |
273 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
34578762 |
tatacgacaaactcaaagtgagagattatttgtggctatagttcctatggaacctgt |
34578706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 7935038 - 7935101
Alignment:
| Q |
334 |
aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7935038 |
aggatagacttttctctctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
7935101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 34578645 - 34578582
Alignment:
| Q |
334 |
aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578645 |
aggatagacttttctctctcccttaattttctcttccctctttgtgtctcaacctttagatcaa |
34578582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 4e-98; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 45623602 - 45623364
Alignment:
| Q |
17 |
caatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45623602 |
caatattcagtttaagttgaattgcatctttaacagtggtagtctactagctttggtggtgtatgctatgatacaatttaaactcaaaggatcacaagtt |
45623503 |
T |
|
| Q |
117 |
ttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattt |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
45623502 |
ttgatgagggctgcattattaaagagtaggcggataaaactgaaactcagaa--aaaaaaaatgtggttgcttgttttacaaactcaaagtgagatattt |
45623405 |
T |
|
| Q |
217 |
tataggacaaactcaaagtgagagattatttgtggctatgg |
257 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45623404 |
tataggacaaactcaaaatgagagattatttgtggctatgg |
45623364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 417 - 605
Target Start/End: Complemental strand, 45623111 - 45622936
Alignment:
| Q |
417 |
tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaatatacaaagctaattaattattatatattttactaccaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45623111 |
tgggtgatgctttatacggtagtatatactatagtaaaaaataatattgacaaagctaat-------------taattattatatattttactaccaaca |
45623025 |
T |
|
| Q |
517 |
tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgt |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45623024 |
tgaaagagcaattatgacctggctgccaccgtcctttcgttgcttcacttcgacggccctttcaccagactctggtcgcatgatgatgt |
45622936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 45623296 - 45623235
Alignment:
| Q |
334 |
aggatagacttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45623296 |
aggatagacttttctctctcccctaattttctcttccctc--tgtgtctcaacctttagatcaa |
45623235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 9809522 - 9809470
Alignment:
| Q |
341 |
acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagat |
394 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9809522 |
acttttctctctcctctaattttctcttccctc-ttgtgtctcaacctttagat |
9809470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 16248507 - 16248453
Alignment:
| Q |
341 |
acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
16248507 |
acttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagatcaa |
16248453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 29846966 - 29847154
Alignment:
| Q |
33 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcat |
132 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29846966 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgagggctgcat |
29847064 |
T |
|
| Q |
133 |
tattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttatagg |
222 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29847065 |
tattaaagagtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgagagattttatagg |
29847154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 29867160 - 29867346
Alignment:
| Q |
33 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcat |
132 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
29867160 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcgcaagttttgatgagggctgcat |
29867258 |
T |
|
| Q |
133 |
tattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgagatattttata |
220 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29867259 |
tattaaagagtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgagagattttata |
29867346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 27128904 - 27128951
Alignment:
| Q |
350 |
tctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27128904 |
tctcctctaattttctctttcctctttgtgtctcaacctttagatcaa |
27128951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 31888821 - 31888875
Alignment:
| Q |
341 |
acttttctttctcccctaattttctcttccctctttgtgtctcaacctttagatcaa |
397 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31888821 |
acttttctctctcctctaattttctcttccctc--tgcgtctcaacctttagatcaa |
31888875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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