View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_high_31 (Length: 343)

Name: NF17836_high_31
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_high_31
NF17836_high_31
[»] chr8 (6 HSPs)
chr8 (232-328)||(26037074-26037171)
chr8 (16-122)||(39746978-39747084)
chr8 (16-59)||(26037019-26037062)
chr8 (67-122)||(39677377-39677432)
chr8 (68-115)||(1363883-1363930)
chr8 (67-122)||(44318251-44318306)
[»] scaffold0598 (1 HSPs)
scaffold0598 (16-122)||(9001-9107)
[»] chr4 (6 HSPs)
chr4 (16-122)||(21633856-21633962)
chr4 (67-145)||(3932327-3932405)
chr4 (73-122)||(4465568-4465617)
chr4 (67-150)||(17715554-17715637)
chr4 (67-122)||(42124750-42124805)
chr4 (16-56)||(31435070-31435110)
[»] chr3 (7 HSPs)
chr3 (16-122)||(37489968-37490074)
chr3 (16-145)||(52225264-52225393)
chr3 (16-110)||(2851831-2851925)
chr3 (83-122)||(24350375-24350414)
chr3 (73-122)||(20450460-20450509)
chr3 (73-121)||(29203128-29203176)
chr3 (73-109)||(33391918-33391954)
[»] chr2 (4 HSPs)
chr2 (16-122)||(4055889-4055995)
chr2 (16-122)||(15250104-15250210)
chr2 (16-54)||(2047357-2047395)
chr2 (16-111)||(24019896-24019991)
[»] chr7 (3 HSPs)
chr7 (15-120)||(22642297-22642402)
chr7 (67-111)||(40893384-40893428)
chr7 (16-121)||(24170748-24170852)
[»] chr1 (11 HSPs)
chr1 (16-121)||(52703135-52703240)
chr1 (16-122)||(18347440-18347545)
chr1 (16-122)||(8221259-8221365)
chr1 (16-121)||(46056450-46056555)
chr1 (73-111)||(322881-322919)
chr1 (73-111)||(19898989-19899027)
chr1 (16-111)||(34318422-34318517)
chr1 (16-54)||(36379170-36379208)
chr1 (73-111)||(39583112-39583150)
chr1 (16-54)||(41005017-41005055)
chr1 (16-122)||(44956283-44956389)
[»] chr6 (3 HSPs)
chr6 (16-111)||(23648206-23648301)
chr6 (16-122)||(6104710-6104816)
chr6 (16-111)||(5301641-5301736)
[»] chr5 (3 HSPs)
chr5 (67-120)||(7896536-7896589)
chr5 (73-111)||(13156973-13157011)
chr5 (73-122)||(23920458-23920507)
[»] scaffold1360 (1 HSPs)
scaffold1360 (67-145)||(1322-1400)
[»] scaffold0041 (1 HSPs)
scaffold0041 (67-111)||(72856-72900)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 26037074 - 26037171
Alignment:
Q  232 aatataaaagaagtctgaaa-aagccaatcgtctttcttagctctggggttaggaggtgttgctggaatcaacaaaacgtggatgacgcccaatttag 328  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26037074 aatataaaagaagtctgaaagaagccaatcgtctttcttagctttggggttaggaggtgttgctggaatcaccaaaacgtggatgacgcccaatttag 26037171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 39746978 - 39747084
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||| ||||||||| | ||| ||||||||       ||||| |||||||| ||||||||||||||| | |||||||||||| |||    
T  39746978 aaaaatagcttataagctcgtgaaataagttataagctcgtggtgaaaaaacattaccaaacagagcttttttggtcaaacgagcttataagctattcgc 39747077  T
Q  116 tataagc 122  Q
    |||||||    
T  39747078 tataagc 39747084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26037019 - 26037062
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggt 59  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  26037019 aaaaataacttataaactcatgaaataaactataaactcgtggt 26037062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 39677432 - 39677377
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||  |||||||||    
T  39677432 cattaccaaacagaactttttttgtcaaacaagcttataagctataagctataagc 39677377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 1363883 - 1363930
Alignment:
Q  68 attaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    |||| ||||||||| |||||| ||||||||| ||||||||||||||||    
T  1363883 attaccaaacagaaattttttagtcaaacaagcttataagctatccgc 1363930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 44318306 - 44318251
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    ||||| |||||  ||||||||| ||||||| ||||||||| |||||||||||||||    
T  44318306 cattatcaaacttaacttttttagtcaaacgaacttataaactatccgctataagc 44318251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 9001 - 9107
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||||||  |||||||| || ||| ||||||||       ||||| |||||||| |||||||| ||||| || ||||||||||||||||    
T  9001 aaaaatagcttataaacttgtgaaataaactataagctcgtggtgaaaacccattaccaaacagagcttttttgatcaaataagcttataagctatccgc 9100  T
Q  116 tataagc 122  Q
    |||||||    
T  9101 tataagc 9107  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 21633856 - 21633962
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||||||||       ||||| |||||| ||||||||| ||||||| ||||||||||||||  ||    
T  21633856 aaaaatagcttataagctcgtgaaataagctataagctcgtggtaagagaacattaccaaacaaaactttttttgtcaaacgaacttataagctataagc 21633955  T
Q  116 tataagc 122  Q
    |||||||    
T  21633956 tataagc 21633962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 3932327 - 3932405
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagccaattttctgaccttaccaaaca 145  Q
    ||||| |||||||| |||||||| |||||| | |||||||||||| ||||||||||  ||||| ||  |||||||||||    
T  3932327 cattaccaaacagagcttttttgatcaaacgagcttataagctattcgctataagctcattttttggtcttaccaaaca 3932405  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 4465568 - 4465617
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||||||    
T  4465568 caaacataactttttttgtcagacaaacttataagctatccactataagc 4465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 17715637 - 17715554
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagccaattttctgaccttaccaaacaaagcc 150  Q
    ||||| |||||||| ||||||| ||||||| | ||||||||||||  ||||||||| || | | || |||||||||||| ||||    
T  17715637 cattaccaaacagagctttttttgtcaaacgagcttataagctataagctataagctaactgtgtggccttaccaaacagagcc 17715554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 42124750 - 42124805
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    ||||| |||||| | ||||||||||||||| | |||||||||||| ||||||||||    
T  42124750 cattaccaaacatagcttttttggtcaaacgagcttataagctattcgctataagc 42124805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 31435110 - 31435070
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgt 56  Q
    ||||||||||||||||||| ||||||||||| ||| |||||    
T  31435110 aaaaataacttataaactcgtgaaataagctataagctcgt 31435070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 37489968 - 37490074
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||||||||       | |||||||| ||| ||||||| ||||||||| ||||||||||||| ||    
T  37489968 aaaaatagcttataagctcgtgaaataagctataagctcgtggtggaaaatctttaacaaatagagctttttttgtcaaacaagcttataagctatcagc 37490067  T
Q  116 tataagc 122  Q
    |||||||    
T  37490068 tataagc 37490074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 52225393 - 52225264
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||||||| ||||||||||| ||| ||| ||||         ||| |||||||||||||| | ||||||| | ||||||||||||  ||    
T  52225393 aaaaatagcttataaactcgtgaaataagctataagctcatggtaaaaaagtgttaccaaacagaacttttgttgtcaaacgagcttataagctatgagc 52225294  T
Q  116 tataagccaattttctgaccttaccaaaca 145  Q
    |||||||  ||||||||| |||||||||||    
T  52225293 tataagctcattttctgatcttaccaaaca 52225264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2851925 - 2851831
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagcta 110  Q
    ||||||| ||||||| ||||||||||||||| ||| ||| ||||         ||| |||||||||||||||| ||||||| |||||||||||||    
T  2851925 aaaaatagcttataagctcatgaaataagctataagctcatggtgaaaaagtgttaccaaacagaactttttttgtcaaacgaacttataagcta 2851831  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24350375 - 24350414
Alignment:
Q  83 ttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  24350375 ttttttggtcaaacaaacttataaactacccgctataagc 24350414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 20450509 - 20450460
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    |||||||| ||||||| |||| || | |||||||||||||||||||||||    
T  20450509 caaacagagctttttttgtcagacgagcttataagctatccgctataagc 20450460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 29203128 - 29203176
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctatccgctataag 121  Q
    ||||||||  |||||| |||| || ||||||||||||||||||||||||    
T  29203128 caaacagagttttttttgtcagacgaacttataagctatccgctataag 29203176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 33391954 - 33391918
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagct 109  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  33391954 caaacagaactttttttgtcaaacgaacttataagct 33391918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 4055995 - 4055889
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| || |||| ||| ||||||||||| ||| ||||||||       ||||| |||||| || |||||| ||||||| ||||||||||||||||||    
T  4055995 aaaaatagctaataagctcgtgaaataagctataagctcgtggtggatgaccattatcaaacataattttttttgtcaaacgaacttataagctatccgc 4055896  T
Q  116 tataagc 122  Q
    |||||||    
T  4055895 tataagc 4055889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 15250210 - 15250104
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||||||||||| |||  |||||||||| ||| ||||||||       ||||| ||||||||  |||||| ||||||| ||||||||||||||| ||    
T  15250210 aaaaataacttataagctcgagaaataagctataagctcgtggtgaaagaccattatcaaacagatttttttttgtcaaacgaacttataagctatctgc 15250111  T
Q  116 tataagc 122  Q
    |||||||    
T  15250110 tataagc 15250104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 2047357 - 2047395
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactc 54  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  2047357 aaaaatagcttataaactcatgaaataagctataaactc 2047395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 24019991 - 24019896
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||||||||       ||||| |||||| | ||||||| ||||||| | ||||||||||||    
T  24019991 aaaaatagcttataagctcgtgaaataagctataagctcgtggttagagatcattaccaaacaaagctttttttgtcaaacgagcttataagctat 24019896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 22642297 - 22642402
Alignment:
Q  15 aaaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccg 114  Q
    |||||||| ||||||||||| ||||||||||| ||| ||||||||       | ||| ||||||||| || ||| |||| ||||||||||||| ||||||    
T  22642297 aaaaaatagcttataaactcgtgaaataagctataagctcgtggtgaaaaaccgttaccaaacagaatttattttgtcagacaaacttataagttatccg 22642396  T
Q  115 ctataa 120  Q
    ||||||    
T  22642397 ctataa 22642402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 40893428 - 40893384
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||    
T  40893428 cattaccaaacagaactttttttgtcaaacgaacttataagctat 40893384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 24170852 - 24170748
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||||||||||||||| ||||||| ||||       ||||| ||| || ||||||||| ||||||  ||||||||| |||| ||     
T  24170852 aaaaatagcttataagctcatgaaataagctataaactcatggtgaaaaaacattaccaagcaaaactttttt-gtcaaatgaacttataaactattcgt 24170754  T
Q  116 tataag 121  Q
    ||||||    
T  24170753 tataag 24170748  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 52703135 - 52703240
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||||||||||| ||| ||||||||||| ||| ||||||||       ||||| ||||||||| |||||| ||||||| | ||||||||||||  ||    
T  52703135 aaaaataacttataagctcgtgaaataagctataagctcgtggtaagagagcattaccaaacagaattttttttgtcaaacgagcttataagctataagc 52703234  T
Q  116 tataag 121  Q
    ||||||    
T  52703235 tataag 52703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 18347440 - 18347545
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||  ||||||||||| ||| ||||||||       ||||| |||||||| |||||||| |||||||||||||||||||||  ||    
T  18347440 aaaaatagcttataagcttgtgaaataagctataagctcgtggtgaaaagacattaccaaacagagcttttttg-tcaaacaaacttataagctataagc 18347538  T
Q  116 tataagc 122  Q
    |||||||    
T  18347539 tataagc 18347545  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 8221259 - 8221365
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||||| ||       | ||| |||||||| ||||||| |||| || | ||||||||||||||||    
T  8221259 aaaaatagcttataagctcgtgaaataagctataagctcgttgtaaaaaaccgttaccaaacagagctttttttgtcagacgagcttataagctatccgc 8221358  T
Q  116 tataagc 122  Q
    |||||||    
T  8221359 tataagc 8221365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 46056450 - 46056555
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| ||| |||||||| || |||  |||||||       ||||| |||| |||| |||||| ||| ||| ||||||||||||||||||    
T  46056450 aaaaatatcttataagctcgtgaaataaactataagttcgtggtgaaaaaacattatcaaatagaatttttttagtcgaacgaacttataagctatccgc 46056549  T
Q  116 tataag 121  Q
    ||||||    
T  46056550 tataag 46056555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 322919 - 322881
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctat 111  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  322919 caaacagaactttttttgtcaaacaagcttataagctat 322881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 19898989 - 19899027
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctat 111  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  19898989 caaacagaactttttttgtcaaacgaacttataagctat 19899027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 34318517 - 34318422
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||||| ||||||| ||| | ||||||||| ||| ||||||||       ||||| |||||||| ||||||| ||| ||||| ||||||||||||    
T  34318517 aaaaatagcttataagctcgtaaaataagctataagctcgtggtgaaaaaccattaccaaacagagctttttttgtcgaacaagcttataagctat 34318422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 36379170 - 36379208
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactc 54  Q
    |||||||||||||||||||||||||||| || |||||||    
T  36379170 aaaaataacttataaactcatgaaataaactataaactc 36379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 39583150 - 39583112
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  39583150 caaacagaattttttttgtcaaacaaacttataagctat 39583112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 41005017 - 41005055
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactc 54  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  41005017 aaaaataacttataagctcatgaaataagctataaactc 41005055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 44956389 - 44956283
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||||||||||| ||| | ||||||||| ||| ||| ||||       ||||| ||||| |||||||||| ||||||| | | |||||| ||| |||    
T  44956389 aaaaataacttataatctcgttaaataagctataagctcatggtaaaaaaccattaccaaacggaactttttttgtcaaacgagcatataagttattcgc 44956290  T
Q  116 tataagc 122  Q
    |||||||    
T  44956289 tataagc 44956283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 23648301 - 23648206
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||||||||       ||||| |||||||| ||||||| ||||||||| ||||||||||||    
T  23648301 aaaaatagcttataagctcgtgaaataagctataagctcgtggtaagagagcattaccaaacagagctttttttgtcaaacaagcttataagctat 23648206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 6104710 - 6104816
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctatccgc 115  Q
    ||||||| ||||||| |||  |||||||||| ||| ||||||||       ||||| |||||||| ||||||||||||||| | |||||||| ||||| |    
T  6104710 aaaaatagcttataagctcgcgaaataagctataagctcgtggtgaaagaccattaccaaacagagcttttttggtcaaacgagcttataagttatccac 6104809  T
Q  116 tataagc 122  Q
    |||||||    
T  6104810 tataagc 6104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 5301641 - 5301736
Alignment:
Q  16 aaaaataacttataaactcatgaaataagctttaaactcgtggtnnnnnnncattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||||| ||||||| ||| ||||||||||| ||| ||| ||||       ||||| |||||||||||||||| |||| || | ||||||||||||    
T  5301641 aaaaatagcttataagctcgtgaaataagctataagctcatggtgaaaaaacattaccaaacagaactttttttgtcatacgagcttataagctat 5301736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 7896589 - 7896536
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataa 120  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  7896589 cattatcaaacataacttttttggtcaaacaaacttataagatattcgctataa 7896536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 13156973 - 13157011
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctat 111  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  13156973 caaacagagctttttttgtcaaacaaacttataagctat 13157011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 23920507 - 23920458
Alignment:
Q  73 caaacagaacttttttggtcaaacaaacttataagctatccgctataagc 122  Q
    |||||||| || |||| |||| || |||||||||||||||||||||||||    
T  23920507 caaacagagctatttttgtcatacgaacttataagctatccgctataagc 23920458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 1322 - 1400
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctatccgctataagccaattttctgaccttaccaaaca 145  Q
    ||||| |||||||| |||||||| |||||| | |||||||||||| ||||||||||  ||||| ||  |||||||||||    
T  1322 cattaccaaacagagcttttttgatcaaacgagcttataagctattcgctataagctcattttttggtcttaccaaaca 1400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 72856 - 72900
Alignment:
Q  67 cattaacaaacagaacttttttggtcaaacaaacttataagctat 111  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||    
T  72856 cattaccaaacagaactttttttgtcaaacgaacttataagctat 72900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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