View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17836_high_32 (Length: 329)
Name: NF17836_high_32
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 38 - 312
Target Start/End: Complemental strand, 42131097 - 42130823
Alignment:
| Q |
38 |
gaccacattattcagaaaagtataccacaaaattgttaatgtgatgccattccttgatcaaataccaatagtttcagccaagagacaataaagttgatgt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
42131097 |
gaccacattattcagaaaagtataccacaaaattgttaatgtgatgccattccttgatcaaataccaatagtttcagccaaaagacaataaagttgatct |
42130998 |
T |
|
| Q |
138 |
tgagaaatgtggttttcttttcttggcaaaatcctcgaatattcctctgtcttccaaggtaatactatgtttttatctcattagcttttttgacaacaaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42130997 |
tgagaaatgtggttttcttttcttggcaaaatcctcgaatattcctctgtcttccaaggtaatactatgtttttatctcattagcttttttgacaacaaa |
42130898 |
T |
|
| Q |
238 |
atcataattaaataatcattgtttccaagcccgtacaattttccaaatttgattaatcttagagtgcgtttggat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
42130897 |
atcataattaaataatcattgtttccaagcccgtacaattttccaaatttgattaatcttagaatgtgtttggat |
42130823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University