View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17836_high_39 (Length: 280)
Name: NF17836_high_39
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 32985554 - 32985804
Alignment:
| Q |
15 |
cagagagactggatatatattacctgagaaggttgccacttcaaaaaatgcaatcgatatgttgaccaagctagtcatcagtgacaagttcaagcattgt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32985554 |
cagatagactggatatatattacctgagaatgttgacacttcaaaaaatgcaatcgatatgttgaccaagctagtcatcagtgacaagttcaagcattgt |
32985653 |
T |
|
| Q |
115 |
taggacttgttgcatttttctcagtgttaagcagaatgagtaccccccagttgcctggatgtgatcgtcatgcatgaagtcttcgtaaagatttaatatt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
32985654 |
taggacttgttgcatttttctcaatgttaagcagaatgagtacccccctattgcctggatgtgatcgtcatgcatgaagtcttcgtaaggatttgatatt |
32985753 |
T |
|
| Q |
215 |
cgtcaaagtggagattgttgaagtatgactcatatataaaagacattgaat |
265 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
32985754 |
cgtcaaagtggagattgttgaagtaggactcatatataaaagacatcgaat |
32985804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 9726399 - 9726220
Alignment:
| Q |
61 |
aatgcaatcgatatgttgaccaagctagtcatcagtgacaagttcaagcattgttaggacttgttgcatttttctcagtgttaagcagaatgagta-ccc |
159 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| || | ||||| | |
|
|
| T |
9726399 |
aatgcaactgatatgttgaccaagtcagtcatcagtgacaagttcaagcatttcatggatttgttgcatgtttctcagtgttaagtaggaggagtattgc |
9726300 |
T |
|
| Q |
160 |
cccagttgcctggatgtgatcgtcatgcatgaagtcttcgtaaagatttaatattcgtcaaagtggagattgttgaagta |
239 |
Q |
| |
|
|| |||| | |||||||||||||||| | |||||||| ||| ||| ||||| ||||| |||||||||||| ||||| |
|
|
| T |
9726299 |
cctagttttcaggatgtgatcgtcatggaggaagtcttaataagagtttgatatttgtcaaggtggagattgttaaagta |
9726220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 34696515 - 34696682
Alignment:
| Q |
24 |
tggatatatattacctgagaaggttgccacttcaaaaaatgcaatcgatatgttgaccaagctagtcatcagtgacaagttcaagcattgttaggacttg |
123 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||| | | |||||| ||||| ||| |||| | ||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
34696515 |
tggacatatattacttgaaaaggttcacacttgagataatgcagctgatattttgtccaaaccagtgatcaatgacaagttcaagcattgtctggacttg |
34696614 |
T |
|
| Q |
124 |
ttgcatttttctcagtgttaagcagaatgagtaccccccagttgcctggatgtgatcgtcatgcatgaa |
192 |
Q |
| |
|
|||||| |||||||||||||||||||| || || | | ||||| |||||||||||||||||||||| |
|
|
| T |
34696615 |
ttgcatgtttctcagtgttaagcagaaagaata-ctcatgtttgccaggatgtgatcgtcatgcatgaa |
34696682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 34697149 - 34697224
Alignment:
| Q |
184 |
atgcatgaagtcttcgtaaagatttaatattcgtcaaagtggagattgttgaagtatgactcatatataaaagaca |
259 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| ||| || ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
34697149 |
atgcatgaagtcttcataacagtttgatattcgccaaggtagagattgttgaagtacgactcatatatacaagaca |
34697224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 10683196 - 10683235
Alignment:
| Q |
71 |
atatgttgaccaagctagtcatcagtgacaagttcaagca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10683196 |
atatgttgaccaagctagtcatcagtgacaagttcaagca |
10683235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 12156145 - 12156052
Alignment:
| Q |
171 |
ggatgtgatcgtcatgcatgaagtcttcgtaaagatttaatattcgtcaaagtggagattgttgaagtatgactcatatataaaagacattgaa |
264 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||| | ||| ||||||| || |||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
12156145 |
ggatgtgattgtaatgcaagaagtcttcataagggtttgatattcgctaagatggatatttttgaagtatgactcatatatagaagacattgaa |
12156052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 43361514 - 43361546
Alignment:
| Q |
229 |
ttgttgaagtatgactcatatataaaagacatt |
261 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
43361514 |
ttgttgaaatatgactcatatataaaagacatt |
43361546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University