View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_41 (Length: 276)
Name: NF17836_high_41
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5482167 - 5481910
Alignment:
| Q |
1 |
gtgtaagtaaccagattagttcacaagagttgcaccaacaaaaacaagttcatcagagtaattttaattttacaaaaggaatttaaaatgattggaaatt |
100 |
Q |
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| T |
5482167 |
gtgtaagtaaccagattagttcacaagagttgcaccaacaaaaacaagttcatcagagtaattttaattttacaaaaggaatttaaaatgattggaaatt |
5482068 |
T |
|
| Q |
101 |
tgaaatgagaatacaataatcgaagtgtaaatgacttcacccttaacatgaataactttcaactacattgaaccccactggaagcatcttgcaggaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5482067 |
tgaaatgagaatacaataatcgaagtgtaaatgacttcacccttaacatgaataactttcaactacattgaaccccactggaagcatcttgcaggaagac |
5481968 |
T |
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| Q |
201 |
gaaaacaaacatatagatattaatctcactcaaaattgtgaataaggtgtggtaaatg |
258 |
Q |
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||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5481967 |
gaagaaaaacatatagagattaatctcactcaaaattgtgaataaggtgtggtaaatg |
5481910 |
T |
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