View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_44 (Length: 256)
Name: NF17836_high_44
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_44 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 47833394 - 47833632
Alignment:
| Q |
19 |
aaacttcgtctacaaaaactaacaggccctaaacacagcaaagtatcagccatggggaacaaaaaccctgctaaccaccagcacaaaaagtagaagctga |
118 |
Q |
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| T |
47833394 |
aaacttcgtctacaaaaactaacaggccctaaacacagcaaagtatcagccatggggaacaaaaaccctgctaaccaccagcacaaaaagtagaagctga |
47833493 |
T |
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| Q |
119 |
aaccgaaccatagcggcagagagataaaacatgct-gcaatgcacgccaatatttcaaaacaaaggcaagtttctaaaaaatgcaacaatagctccgaaa |
217 |
Q |
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| T |
47833494 |
aaccgaaccatagcggcagagagattaaacatgctggcaatgcacgccaatatttcaaaacaaaggcaaatttctaaaaaacacaacaatagctccgaaa |
47833593 |
T |
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| Q |
218 |
tggaacattaatcatctagccaaacaacttatagatccc |
256 |
Q |
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| T |
47833594 |
tggaacattaatcatctagccaaacaacttatagatccc |
47833632 |
T |
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