View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_47 (Length: 249)
Name: NF17836_high_47
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_47 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 48868864 - 48868632
Alignment:
| Q |
17 |
aattatgtgattggtaattcaataggctcttctgcgactcctgttgtgaatgttgttgaacgagaagaagggccgtcaacgaaaccatatgaggcatata |
116 |
Q |
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| T |
48868864 |
aattatgtgattggtaattcaataggctcttctacgactcctgttgtgaatgttgttgaacgagaagaagggccgtcaacgaaaccatatgaggcatata |
48868765 |
T |
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| Q |
117 |
tgatgagcaacaagatggagtgtaaaagtagctgtatctctgatgatatttgttcactcgaagacgtcatcaaagtcatgaccaaacaggtaatataatt |
216 |
Q |
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| T |
48868764 |
tgatgagcaacaagatggagtgtaaaagtagctgtatctctgatgatatttgttcactcgaagacgtcatcaaagtcatgaccaaacaggtaatataatt |
48868665 |
T |
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| Q |
217 |
tatgcaatctgatgaagttcttatctgagtttt |
249 |
Q |
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| T |
48868664 |
tatgcaatctgatgaagttcttatctgagtttt |
48868632 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 2894864 - 2894926
Alignment:
| Q |
21 |
atgtgattggtaattcaataggctcttctgcgactcctgttgtgaatgttgttgaacgagaag |
83 |
Q |
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| T |
2894864 |
atgtgatcggcaattcaataggctcttctatgattcctggtatgaatgttgttgaacaagaag |
2894926 |
T |
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