View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_52 (Length: 239)
Name: NF17836_high_52
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_52 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 25089 - 24946
Alignment:
| Q |
19 |
ctacctgctactaccctatacagttaaagacaaataccttaaatgtcattattactatcactacattttctactaaaccaaacacaaacgttcttcttca |
118 |
Q |
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| T |
25089 |
ctacctgctactaccctatacagttaaagacaaataccttaaatgttattattactatcactacattttctactaaaccaaacacaaacgttcttcttca |
24990 |
T |
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| Q |
119 |
tcttcttcatctgaatcatcaaaaacatcaaaaaatggcaatga |
162 |
Q |
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| T |
24989 |
tcatcttcatctgaatcatcaaaaacatcaaaaaatggcaatga |
24946 |
T |
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