View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_53 (Length: 237)
Name: NF17836_high_53
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 35768455 - 35768663
Alignment:
| Q |
30 |
aaagggcaaaaagagaagacagt-taagtaaagtatgcaagctctttattaatggaagataacttgaaacagtatacaaagatcattttcaatgtacata |
128 |
Q |
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| T |
35768455 |
aaagggcaaaaagagaagacagtataagtaaagtatgcaagctctttattaatggaagataacttgaaacagtatacaaagatcaatttcaatgtacata |
35768554 |
T |
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| Q |
129 |
atgatcgtactcgtaggtaggaatacagttgaagcttggtacaatattaattaagctgtaattttgtgtatcctaaaagcatccaacaagtatcgcccat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35768555 |
atgatcgtactcgtaggtaggaatacagttgaagcttggtacaatattaattaagctgtaattttgtgtatcctaaaagcatccaacaagtatcgcccat |
35768654 |
T |
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| Q |
229 |
tttctattc |
237 |
Q |
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||||||||| |
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| T |
35768655 |
tttctattc |
35768663 |
T |
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