View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_54 (Length: 236)
Name: NF17836_high_54
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 35768451 - 35768307
Alignment:
| Q |
7 |
cagcaagggccacagcccccctggacatttttaaaaaaccgacaatactag----tatgctattaaaataacaacccttgaattttttactctactttgg |
102 |
Q |
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| T |
35768451 |
cagcaagggccacagtcccc-tggacttttttaaaaaaccgacaatactagctagtatgctattaaaataacaacccttgaattttttactctactttgg |
35768353 |
T |
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| Q |
103 |
gaaaaaggacaacggttaagccctacaatagtaaccaaaatatgtg |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35768352 |
gaaaaaggacaacggttaagccctacaatagtaaccaaaatatgtg |
35768307 |
T |
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