View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_high_62 (Length: 206)
Name: NF17836_high_62
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 41958536 - 41958366
Alignment:
| Q |
16 |
gattgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41958536 |
gattgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtata |
41958437 |
T |
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| Q |
116 |
gtttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41958436 |
gtttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtactatgctgtgtttttc |
41958366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 43300358 - 43300535
Alignment:
| Q |
18 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43300358 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgaaagtttgtgtctttacgctaaaatggtggttggaaagtgatttagtgtatagt |
43300457 |
T |
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| Q |
118 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
43300458 |
ttgtttcatgagttttgcttttgatttaactatgttatgtttttgttttagtactatgctgtgtttttcaatgttctt |
43300535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 19209045 - 19208868
Alignment:
| Q |
18 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
117 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19209045 |
ttgctgtatgaaatgttctgtgaaataggctatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtgtagt |
19208946 |
T |
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| Q |
118 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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|| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
19208945 |
ttatttcgtgagttttgcatttgatttaacaatgttatgtttttgttttagtaccatgttgtgtttttcaatgttctt |
19208868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 23738068 - 23738245
Alignment:
| Q |
18 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
117 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23738068 |
ttgctgtatgaaatgttctgtgaaataggttatcaaaaagtttatgaaagtctgtgtctttatgctaaaatggtggttggaaagtgatttagtgtgtagt |
23738167 |
T |
|
| Q |
118 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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|| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |
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| T |
23738168 |
ttatttcgtgagttttgcatttgatttaacaatgttatgtttttgttttagtaccatgttgtgtttttcaatgttctt |
23738245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 28450488 - 28450647
Alignment:
| Q |
36 |
tgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagtttgtttcatgagttttgc |
135 |
Q |
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||||||||||||||||||| |||||||| |||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28450488 |
tgtgaaatgggtcatcaaagaatttatgaaagtttatatctttaggctaaaatggtggttggaaagtgatttagttaatagtttgtttcatgagttttgc |
28450587 |
T |
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| Q |
136 |
atttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
28450588 |
atttaatttaactatgttatgtttttgttttagtactatgttgtgtttttcaatgttctt |
28450647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 28450712 - 28450753
Alignment:
| Q |
148 |
tatgttatgtttttgttttagtattatgctgtgtttttcaat |
189 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28450712 |
tatgttatgtttttgttttagtactatgttgtgtttttcaat |
28450753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 44660493 - 44660670
Alignment:
| Q |
18 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660493 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaagatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
44660592 |
T |
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| Q |
118 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
44660593 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtactatgctgtgtttttcaatgttctt |
44660670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 43916285 - 43916462
Alignment:
| Q |
18 |
ttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagt |
117 |
Q |
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|
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43916285 |
ttgctgtatgaaatgttctgtgaaatgggtcataaatttttttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtacaat |
43916384 |
T |
|
| Q |
118 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtattatgctgtgtttttcaatattctt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
43916385 |
ttgtttcatgagttttgcatttgatttaactatgttatgtttttgttttagtactatgttgtgtttttcaatgttctt |
43916462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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