View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_10 (Length: 501)

Name: NF17836_low_10
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_10
NF17836_low_10
[»] chr7 (4 HSPs)
chr7 (402-483)||(8597133-8597214)
chr7 (289-344)||(4157385-4157440)
chr7 (288-344)||(17601037-17601093)
chr7 (286-333)||(18098027-18098074)
[»] chr1 (4 HSPs)
chr1 (288-344)||(22607502-22607558)
chr1 (153-258)||(32987180-32987278)
chr1 (289-344)||(17615710-17615765)
chr1 (284-344)||(22619684-22619744)
[»] chr3 (4 HSPs)
chr3 (289-344)||(26014054-26014109)
chr3 (289-344)||(8736821-8736876)
chr3 (289-344)||(9089062-9089117)
chr3 (289-342)||(23378929-23378982)
[»] chr5 (2 HSPs)
chr5 (283-344)||(24878808-24878869)
chr5 (201-261)||(18265559-18265617)
[»] chr6 (1 HSPs)
chr6 (288-344)||(17947575-17947631)
[»] chr2 (3 HSPs)
chr2 (289-345)||(17638235-17638291)
chr2 (289-345)||(17676999-17677055)
chr2 (289-344)||(27850504-27850560)
[»] chr8 (1 HSPs)
chr8 (291-344)||(16601006-16601059)
[»] chr4 (1 HSPs)
chr4 (151-191)||(2708463-2708503)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 8597133 - 8597214
Alignment:
Q  402 gttattattaatgtcatgggtgataattttatactagtgaaatcagttcagatgttatcaagatatattgggatagtgtatt 483  Q
    ||||||| ||||| ||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||||    
T  8597133 gttattactaatgacatgggtgacaattttatactggtgaaatcaatttagatgttatcaagatatattgagatagtgtatt 8597214  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 4157440 - 4157385
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    |||||| ||| | |||||||||||| ||||||| ||||||||||||||||||||||    
T  4157440 tgttagtctgtattttcaaaaggcttatttaatgcgatcaacattagttgactttt 4157385  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 17601093 - 17601037
Alignment:
Q  288 ctgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||||||||| ||||||  |||||||||||||| || |||||||||||||| ||||    
T  17601093 ctgttagcctgtaatttcgcaaggctcatttaatgcggtcaacattagttgaatttt 17601037  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 18098027 - 18098074
Alignment:
Q  286 atctgttagcctgcaatttcaaaaggctcatttaatacgatcaacatt 333  Q
    |||||||||||||||| ||||| |||||||||||||| | ||||||||    
T  18098027 atctgttagcctgcaaattcaacaggctcatttaatatggtcaacatt 18098074  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 22607502 - 22607558
Alignment:
Q  288 ctgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||    
T  22607502 ctgttagcctgtattttcaaaaggctaatttaatacgatcaacattagttgactttt 22607558  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 32987180 - 32987278
Alignment:
Q  153 ttagaacaatagttaacaattagttcaaaaatatttttggtcatcgaagaagagattactgagttgagttgcggactaggtcgctctccctttaagatgt 252  Q
    |||| |||||||| || |||||||| ||||||| |||| ||||||||||   |||||||| || ||||| |||||||||||| ||||  |||||||||||    
T  32987180 ttagcacaatagtcaa-aattagtt-aaaaatagtttttgtcatcgaag---agattactaagctgagtcgcggactaggtcactct--ctttaagatgt 32987272  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 17615765 - 17615710
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||||| || |||||||| || |||||||||| || |||||||||||||||||||    
T  17615765 tgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgactttt 17615710  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 22619684 - 22619744
Alignment:
Q  284 caatctgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    |||| |||||||||  | || |||||||||||||||||  | |||||||||||||||||||    
T  22619684 caatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgactttt 22619744  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 26014109 - 26014054
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  26014109 tgttagcctgcaatttcaaaaggttcatttaatgcggtcaacattagttgactttt 26014054  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 8736821 - 8736876
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||    
T  8736821 tgttagcctgtaatttcaacaggctcatttaatacggtcaacattagttaactttt 8736876  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 9089062 - 9089117
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||    
T  9089062 tgttagcctgtaatttcaacaggctcatttaatacggtcaacattagttaactttt 9089117  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 23378982 - 23378929
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactt 342  Q
    |||||||||||||||| || |||||||||||||  |  ||||||||||||||||    
T  23378982 tgttagcctgcaattttaacaggctcatttaatgtggccaacattagttgactt 23378929  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 24878869 - 24878808
Alignment:
Q  283 tcaatctgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||| |||||||||| |||||||| ||||||||||||| |  |||||||||||||||||||    
T  24878869 tcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgactttt 24878808  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 18265617 - 18265559
Alignment:
Q  201 gaagagattactgagttgagttgcggactaggtcgctctccctttaagatgttttgtgaca 261  Q
    ||||||||||||  | ||||| |||||||||||||||||  |||||||| |||||||||||    
T  18265617 gaagagattactaggctgagtagcggactaggtcgctct--ctttaagacgttttgtgaca 18265559  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 17947575 - 17947631
Alignment:
Q  288 ctgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    ||||||||||| |||||||||||||| | |||||  | |||||||||||||||||||    
T  17947575 ctgttagcctgtaatttcaaaaggctaaattaatgtggtcaacattagttgactttt 17947631  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 17638291 - 17638235
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgacttttg 345  Q
    ||||||||||||||||||| ||||||| ||||| |  |||||||| |||||||||||    
T  17638291 tgttagcctgcaatttcaataggctcaattaatgcagtcaacatttgttgacttttg 17638235  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 17677055 - 17676999
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgacttttg 345  Q
    ||||||||||||||||||| ||||||| ||||| |  |||||||| |||||||||||    
T  17677055 tgttagcctgcaatttcaacaggctcaattaatgcagtcaacatttgttgacttttg 17676999  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 27850504 - 27850560
Alignment:
Q  289 tgttagcctgcaatttcaaaaggctcatttaatacgatcaaca-ttagttgactttt 344  Q
    |||||||||| |||||| | |||||||||||||| | |||||| |||||||||||||    
T  27850504 tgttagcctgtaatttcgataggctcatttaatatggtcaacatttagttgactttt 27850560  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 16601059 - 16601006
Alignment:
Q  291 ttagcctgcaatttcaaaaggctcatttaatacgatcaacattagttgactttt 344  Q
    |||||||| |||||||| || |||||||||| |  |||||||||||||||||||    
T  16601059 ttagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttt 16601006  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 2708503 - 2708463
Alignment:
Q  151 tgttagaacaatagttaacaattagttcaaaaatatttttg 191  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  2708503 tgtttgaacaatagttaaaaatcagttcaaaaatatttttg 2708463  T

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