View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_12 (Length: 482)

Name: NF17836_low_12
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_12
NF17836_low_12
[»] chr3 (27 HSPs)
chr3 (18-369)||(47319132-47319478)
chr3 (80-123)||(20669547-20669590)
chr3 (78-116)||(10277378-10277416)
chr3 (79-121)||(20669101-20669143)
chr3 (86-125)||(21661443-21661482)
chr3 (72-123)||(23815968-23816019)
chr3 (152-226)||(33883754-33883828)
chr3 (74-115)||(20170818-20170859)
chr3 (152-204)||(22203422-22203474)
chr3 (159-211)||(24280710-24280762)
chr3 (74-110)||(50709494-50709530)
chr3 (73-112)||(29002955-29002994)
chr3 (79-118)||(30574021-30574060)
chr3 (151-226)||(39602214-39602289)
chr3 (151-205)||(21367658-21367712)
chr3 (77-123)||(44014897-44014943)
chr3 (79-113)||(46030910-46030944)
chr3 (80-122)||(54194442-54194484)
chr3 (167-220)||(25170815-25170867)
chr3 (79-108)||(28795961-28795990)
chr3 (80-125)||(34235178-34235223)
chr3 (172-205)||(34924563-34924596)
chr3 (80-117)||(37389124-37389161)
chr3 (96-125)||(44488823-44488852)
chr3 (83-123)||(25258697-25258737)
chr3 (95-123)||(41028955-41028983)
chr3 (153-205)||(51510218-51510270)
[»] chr5 (22 HSPs)
chr5 (74-123)||(10771982-10772031)
chr5 (151-272)||(10272385-10272510)
chr5 (80-123)||(42573883-42573926)
chr5 (151-221)||(12425562-12425632)
chr5 (80-119)||(6096466-6096505)
chr5 (80-123)||(7674571-7674614)
chr5 (74-117)||(12425488-12425531)
chr5 (88-123)||(14599409-14599444)
chr5 (80-123)||(19460490-19460533)
chr5 (74-117)||(39105381-39105424)
chr5 (151-205)||(2568649-2568703)
chr5 (95-125)||(29588818-29588848)
chr5 (154-220)||(38104867-38104932)
chr5 (159-220)||(33533549-33533610)
chr5 (159-220)||(34690872-34690933)
chr5 (83-123)||(465880-465920)
chr5 (95-123)||(1773529-1773557)
chr5 (95-123)||(7096231-7096259)
chr5 (154-272)||(12459955-12460077)
chr5 (95-123)||(13224367-13224395)
chr5 (156-220)||(31694514-31694578)
chr5 (153-201)||(34117565-34117613)
[»] chr4 (18 HSPs)
chr4 (66-123)||(2987097-2987155)
chr4 (74-123)||(6364066-6364115)
chr4 (74-123)||(26520333-26520382)
chr4 (151-211)||(35571650-35571710)
chr4 (162-226)||(55084485-55084549)
chr4 (160-211)||(2996573-2996624)
chr4 (153-220)||(49219132-49219199)
chr4 (153-219)||(16494816-16494882)
chr4 (159-205)||(17822890-17822936)
chr4 (74-123)||(2980575-2980623)
chr4 (160-205)||(11158382-11158427)
chr4 (152-225)||(49202637-49202710)
chr4 (95-123)||(4191677-4191705)
chr4 (153-205)||(8422864-8422916)
chr4 (95-123)||(25487649-25487677)
chr4 (153-205)||(30207596-30207648)
chr4 (95-123)||(47970256-47970284)
chr4 (160-204)||(56480348-56480392)
[»] chr2 (22 HSPs)
chr2 (79-117)||(9174736-9174774)
chr2 (79-123)||(9833077-9833121)
chr2 (80-119)||(32364832-32364871)
chr2 (151-205)||(43985028-43985082)
chr2 (173-226)||(12313177-12313230)
chr2 (78-123)||(23747225-23747270)
chr2 (153-205)||(29510585-29510637)
chr2 (74-117)||(8017352-8017395)
chr2 (158-205)||(9174813-9174860)
chr2 (159-206)||(10884545-10884592)
chr2 (82-125)||(15288708-15288751)
chr2 (162-263)||(19629365-19629468)
chr2 (80-123)||(39567826-39567869)
chr2 (167-225)||(35379021-35379079)
chr2 (160-206)||(36863649-36863695)
chr2 (167-220)||(9556246-9556299)
chr2 (159-220)||(16867738-16867799)
chr2 (95-123)||(5133710-5133738)
chr2 (151-211)||(9477943-9478003)
chr2 (153-205)||(22681210-22681262)
chr2 (159-227)||(26372740-26372807)
chr2 (95-123)||(41033054-41033082)
[»] chr1 (28 HSPs)
chr1 (74-123)||(9507104-9507153)
chr1 (88-127)||(1005133-1005172)
chr1 (159-226)||(25479580-25479647)
chr1 (151-205)||(49888758-49888812)
chr1 (159-220)||(26779935-26779996)
chr1 (154-211)||(31294540-31294597)
chr1 (153-272)||(31517694-31517817)
chr1 (152-220)||(38247063-38247131)
chr1 (88-123)||(172681-172716)
chr1 (80-123)||(8852783-8852826)
chr1 (151-226)||(10199412-10199487)
chr1 (153-220)||(23902077-23902144)
chr1 (95-125)||(2462905-2462935)
chr1 (74-116)||(5894274-5894316)
chr1 (153-211)||(7218093-7218151)
chr1 (159-220)||(3234025-3234086)
chr1 (152-205)||(7137023-7137076)
chr1 (152-205)||(7472303-7472356)
chr1 (160-205)||(28083315-28083360)
chr1 (152-225)||(38882917-38882989)
chr1 (94-123)||(50319229-50319258)
chr1 (95-123)||(13037802-13037830)
chr1 (97-125)||(29351539-29351567)
chr1 (151-211)||(29793773-29793833)
chr1 (152-220)||(34290228-34290296)
chr1 (159-227)||(35351038-35351106)
chr1 (236-272)||(36070261-36070297)
chr1 (153-205)||(37241847-37241899)
[»] chr7 (13 HSPs)
chr7 (153-273)||(2825189-2825308)
chr7 (179-266)||(35007617-35007704)
chr7 (80-120)||(19718930-19718970)
chr7 (172-224)||(25596045-25596097)
chr7 (74-122)||(35266816-35266864)
chr7 (150-205)||(20881661-20881716)
chr7 (80-123)||(47795880-47795923)
chr7 (162-205)||(48917371-48917414)
chr7 (159-225)||(39967919-39967985)
chr7 (74-116)||(44777093-44777135)
chr7 (160-204)||(30456476-30456520)
chr7 (95-123)||(33894561-33894589)
chr7 (153-205)||(38010707-38010759)
[»] chr8 (21 HSPs)
chr8 (80-123)||(8216803-8216846)
chr8 (160-205)||(9956839-9956884)
chr8 (153-205)||(8062517-8062569)
chr8 (162-206)||(26473776-26473820)
chr8 (95-126)||(8536149-8536180)
chr8 (80-123)||(26215419-26215462)
chr8 (80-123)||(27492882-27492925)
chr8 (80-123)||(37444519-37444562)
chr8 (80-122)||(3936772-3936814)
chr8 (157-211)||(7714239-7714293)
chr8 (236-282)||(10939455-10939501)
chr8 (77-123)||(16162685-16162731)
chr8 (159-205)||(27028830-27028876)
chr8 (151-205)||(31862484-31862538)
chr8 (152-205)||(8062321-8062374)
chr8 (157-264)||(27754401-27754512)
chr8 (94-123)||(37220253-37220282)
chr8 (80-125)||(41442537-41442582)
chr8 (94-123)||(42597338-42597367)
chr8 (74-126)||(8629027-8629078)
chr8 (159-203)||(30627929-30627973)
[»] chr6 (12 HSPs)
chr6 (167-226)||(6647394-6647453)
chr6 (160-264)||(20368142-20368250)
chr6 (85-123)||(24476530-24476568)
chr6 (153-226)||(2112193-2112266)
chr6 (160-205)||(31812038-31812083)
chr6 (77-123)||(103373-103419)
chr6 (95-125)||(10452462-10452492)
chr6 (95-123)||(4247738-4247766)
chr6 (95-123)||(31461616-31461644)
chr6 (95-123)||(31668789-31668817)
chr6 (95-123)||(33069630-33069658)
chr6 (80-120)||(33736761-33736801)
[»] scaffold0221 (1 HSPs)
scaffold0221 (80-123)||(2718-2761)
[»] scaffold0019 (1 HSPs)
scaffold0019 (84-123)||(104238-104277)
[»] scaffold0459 (1 HSPs)
scaffold0459 (94-123)||(8278-8307)
[»] scaffold0366 (1 HSPs)
scaffold0366 (94-123)||(8202-8231)
[»] scaffold0590 (1 HSPs)
scaffold0590 (95-123)||(1178-1206)
[»] scaffold0275 (1 HSPs)
scaffold0275 (95-123)||(2769-2797)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 47319478 - 47319132
Alignment:
Q  18 attataaagtagatgaatctatgtgagtgttggaggtgcctcattgaattataacaaagtgtttatcatgataaacacttatgtataagctatttctata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47319478 attataaagtagatgaatctatgtgagtgttggaggtgcctcattgaattataacatagtgtttatcatgataaacacttatgtataagctatttctata 47319379  T
Q  118 acaaaataattcnnnnnnnnnnnnnnnnnnnnccgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaact 217  Q
    ||| ||||||||                    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319378 acacaataattcattttattttatttt-----ccgtataaactataagctgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaact 47319284  T
Q  218 tattaacatataagttgcttcataagttctcctaaatagtctcacaagtgattatactggtagattagattagataagacattccaaacaagaccttagt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319283 tattaacatataagttgcttcataagttctcctaaatagtctcacaagtgattatactggtagattagattagataagacattccaaacaagaccttagt 47319184  T
Q  318 ctgtcaatgtctctatttttggttaaggaatgttctctctattttcctcggc 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47319183 ctgtcaatgtctctatttttggttaaggaatgctctctctattttcctcggc 47319132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 20669547 - 20669590
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20669547 ttatcatgataaacacttatgtataagctatttctataacaaaa 20669590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 10277416 - 10277378
Alignment:
Q  78 gtttatcatgataaacacttatgtataagctatttctat 116  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10277416 gtttatcatgataaacacttatgtataagctatttctat 10277378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 20669101 - 20669143
Alignment:
Q  79 tttatcatgataaacacttatgtataagctatttctataacaa 121  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  20669101 tttatcatgataagcacttatgtataagctatttctataacaa 20669143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 21661443 - 21661482
Alignment:
Q  86 tgataaacacttatgtataagctatttctataacaaaata 125  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  21661443 tgataaacacttatgtataagctatttcaataacaaaata 21661482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 23815968 - 23816019
Alignment:
Q  72 caaagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||| ||||    
T  23815968 caaagtgcttatcatgataagcacttatgtataagttatttctataataaaa 23816019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 33883828 - 33883754
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    |||| ||||||| ||||||  ||||| |||||||||||| ||||||||||||||  |||| |||||||| |||||    
T  33883828 gtatgaactatatgttgtttacataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaacat 33883754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 20170859 - 20170818
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttcta 115  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  20170859 aagtctttatcatgataaacacttatgaataagctatttcta 20170818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 22203422 - 22203474
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataa 204  Q
    |||||| |||||||||||| |||||| ||||||| |||| |||||||||||||    
T  22203422 gtataatctataagttgttttcataagctatcttggagaacttatgaaaataa 22203474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 24280710 - 24280762
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||||| ||||||||||| ||||| | |||||||||||||||||||| ||||    
T  24280710 ctataagctgttgtcataagctatcatggagagcttatgaaaataagttgaaa 24280762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 50709494 - 50709530
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctat 110  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50709494 aagtgcttatcatgataaacacttatgtataagctat 50709530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 29002994 - 29002955
Alignment:
Q  73 aaagtgtttatcatgataaacacttatgtataagctattt 112  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  29002994 aaagcgtttatcatgataaacacttatgtataagttattt 29002955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 30574060 - 30574021
Alignment:
Q  79 tttatcatgataaacacttatgtataagctatttctataa 118  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  30574060 tttatcatgataagcgcttatgtataagctatttctataa 30574021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 39602289 - 39602214
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    |||||||  |||||| |||| |||||| ||||||| |||| ||||||||||||||| |||| ||| |||| |||||    
T  39602289 cgtataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacat 39602214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 21367658 - 21367712
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||  ||||||||||| |||||| ||||||| |||| ||||||||||||||    
T  21367658 cgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataag 21367712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 44014943 - 44014897
Alignment:
Q  77 tgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||||    
T  44014943 tgtttatcatgataaatgcttatgtagaagctatttccataacaaaa 44014897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 46030910 - 46030944
Alignment:
Q  79 tttatcatgataaacacttatgtataagctatttc 113  Q
    ||||||||||||||||||||| |||||||||||||    
T  46030910 tttatcatgataaacacttatatataagctatttc 46030944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 54194442 - 54194484
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaa 122  Q
    |||| ||||||| | ||||||||||||||||||||||||||||    
T  54194442 ttatgatgataagcgcttatgtataagctatttctataacaaa 54194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 25170815 - 25170867
Alignment:
Q  167 tgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||| |||||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  25170815 tgttttcataagctatctt-gagagcttatgaaaataagttgaaatcagcttat 25170867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 28795990 - 28795961
Alignment:
Q  79 tttatcatgataaacacttatgtataagct 108  Q
    ||||||||||||||||||||||||||||||    
T  28795990 tttatcatgataaacacttatgtataagct 28795961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 34235223 - 34235178
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaata 125  Q
    |||||||||||| |||||||||| |||||||||| ||| |||||||    
T  34235223 ttatcatgataagcacttatgtagaagctatttccatagcaaaata 34235178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 34924596 - 34924563
Alignment:
Q  172 tcataatctatcttagagagcttatgaaaataag 205  Q
    |||||| |||||||||||||||||||||||||||    
T  34924596 tcataagctatcttagagagcttatgaaaataag 34924563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 37389124 - 37389161
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctata 117  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  37389124 ttatcatgataagcacttatgtataagctatttatata 37389161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 44488823 - 44488852
Alignment:
Q  96 ttatgtataagctatttctataacaaaata 125  Q
    ||||||||||||||||||||||||||||||    
T  44488823 ttatgtataagctatttctataacaaaata 44488852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 25258697 - 25258737
Alignment:
Q  83 tcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  25258697 tcatgaaaaacacttatgcataagctatttctataataaaa 25258737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 41028983 - 41028955
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  41028983 cttatgtataagctatttctataacaaaa 41028955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 51510270 - 51510218
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||||||||||||| ||||||  |||| | ||||||||||| |||||||    
T  51510270 tataaactataagttgttttcataagttatcgtggagagcttatggaaataag 51510218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 10772031 - 10771982
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  10772031 aagtgcttatcatgataaacacatatgtataagctatttctataacaaaa 10771982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 10272510 - 10272385
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat---ataagttgcttc-ataagttc 246  Q
    ||||||| |||||||||||| |||||| | ||||| ||||| |||||||||||||  |||| |||||||   ||||   |||||||| ||| |||||  |    
T  10272510 cgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgtttctataagcac 10272411  T
Q  247 tcctaaatagtctcacaagtgattat 272  Q
    ||| |||||||| |||||||||||||    
T  10272410 tcccaaatagtcacacaagtgattat 10272385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 42573926 - 42573883
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  42573926 ttatcatgataagcgcttatgtataagctatttctataacaaaa 42573883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 12425562 - 12425632
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttatt 221  Q
    ||||||| ||||||| |||| ||| || ||||||| |||| ||||||||||||||| |||| |||||||||    
T  12425562 cgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaacaacttatt 12425632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 6096466 - 6096505
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataac 119  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  6096466 ttatcatgataagcacttatgtataagctatttttataac 6096505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 7674571 - 7674614
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||    
T  7674571 ttatcatgataagcacttatatataagctatttctataccaaaa 7674614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 12425488 - 12425531
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctata 117  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||    
T  12425488 aagtgtttatcatgataaacgcttatgtataaactatttatata 12425531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 14599444 - 14599409
Alignment:
Q  88 ataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||| |||||||||||||||||||||    
T  14599444 ataaacacttatgtttaagctatttctataacaaaa 14599409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 19460533 - 19460490
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||    
T  19460533 ttatcatgataagcacttatgtataaactatttctatatcaaaa 19460490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 39105381 - 39105424
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctata 117  Q
    ||||| |||||||||||| | |||||||||||||||||||||||    
T  39105381 aagtgcttatcatgataagcgcttatgtataagctatttctata 39105424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 2568649 - 2568703
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||| |||||||||||| |||||| ||||| | ||||||| |||||||||||    
T  2568649 cgtataagctataagttgttttcataagctatcatggagagctaatgaaaataag 2568703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 29588818 - 29588848
Alignment:
Q  95 cttatgtataagctatttctataacaaaata 125  Q
    |||||||||||||||||||||||||||||||    
T  29588818 cttatgtataagctatttctataacaaaata 29588848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 38104932 - 38104867
Alignment:
Q  154 ataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||| ||||||| |||| |||||| ||||||||||||||||||| |||||||  |||| ||||||||    
T  38104932 ataatctataagctgtt-tcataagctatcttagagagcttatggaaataagctgaaaacaacttat 38104867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 33533610 - 33533549
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||||| |||| ||| || ||||||| ||||||||||| |||||||| |||| ||||||||    
T  33533610 ctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttat 33533549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 34690872 - 34690933
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||||||||||| |||||| | ||||| ||||||||||| |||||||| || | ||||||||    
T  34690872 ctataagttgttctcataagccatcttggagagcttatggaaataagtcgataacaacttat 34690933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 465880 - 465920
Alignment:
Q  83 tcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||| ||||||| |||||||||||||||| ||||||    
T  465880 tcatgataagcacttatatataagctatttctatgacaaaa 465920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 1773557 - 1773529
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  1773557 cttatgtataagctatttctataacaaaa 1773529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 7096259 - 7096231
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  7096259 cttatgtataagctatttctataacaaaa 7096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 12460077 - 12459955
Alignment:
Q  154 ataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat---ataagttg-cttcataagttctcc 249  Q
    ||||||||||||||||  ||| || |||||||  ||||||||||||||||||   ||| |||| ||| |||||   ||||||||  |||||| |||||||    
T  12460077 ataaactataagttgtcttcacaagctatcttgcagagcttatgaaaataagccaaaaacaacatatgaacatgtcataagttgttttcataggttctcc 12459978  T
Q  250 taaatagtctcacaagtgattat 272  Q
     ||| ||||||||| ||| ||||    
T  12459977 caaacagtctcacaggtgcttat 12459955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 13224367 - 13224395
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  13224367 cttatgtataagctatttctataacaaaa 13224395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 31694514 - 31694578
Alignment:
Q  156 aaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||||||||||||| || ||| ||  |||  ||||||||||||||||||| |||| ||||||||    
T  31694514 aaactataagttgttctcttaagctcacttgtagagcttatgaaaataagttgaaaacaacttat 31694578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 34117613 - 34117565
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaa 201  Q
    ||||| |||||||||| | |||||| ||||||| |||||||||||||||    
T  34117613 tataagctataagttgctttcataagctatcttggagagcttatgaaaa 34117565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 2987097 - 2987155
Alignment:
Q  66 ttataaca-aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  2987097 ttataacataagtgtttatcatgataagcacttatttataagctatttctacaacaaaa 2987155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 6364066 - 6364115
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  6364066 aagtgcttatcaagataagcacttatgtataagctatttctataacaaaa 6364115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 26520382 - 26520333
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  26520382 aagtgtttatcatgataagcacttatgtataaactgtttctataacaaaa 26520333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 35571710 - 35571650
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||||| ||||||| |||| |||||| |||||||||||| ||| ||||||||||| ||||    
T  35571710 cgtataagctataagctgttttcataagctatcttagagaacttgtgaaaataagttgaaa 35571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 55084549 - 55084485
Alignment:
Q  162 taagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    ||||||||| |||| | |||||||||||||||||||||||||||  |||| || ||||| |||||    
T  55084549 taagttgttttcatgagctatcttagagagcttatgaaaataagctgaaaccagcttatgaacat 55084485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 2996573 - 2996624
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||||||||| |||||| ||||||| |||||| ||||||||||||| ||||    
T  2996573 tataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaa 2996624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 49219132 - 49219199
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||| |||||||||||| |||||| |||||||| |||| ||||| |||||||  |||| ||||||||    
T  49219132 tataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttat 49219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 16494882 - 16494816
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaactta 219  Q
    ||||| |||||||||||| |||||| ||||||| |||||||| | ||| ||||| |||| |||||||    
T  16494882 tataagctataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaacaactta 16494816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 17822936 - 17822890
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||||||| |||||| ||||||| |||| ||||||||||||||    
T  17822936 ctataagttgttttcataagctatcttggagaacttatgaaaataag 17822890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 2980623 - 2980575
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  2980623 aagtgtttatcat-ataagtgcttatgtataagctatttctataacaaaa 2980575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 11158427 - 11158382
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||||||| |||||| |||||||||||||||| || |||||||    
T  11158427 tataagttgttttcataagctatcttagagagcttgtggaaataag 11158382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 49202637 - 49202710
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaaca 225  Q
    |||||| |||||||||||| || ||| ||||||| || | || |||||||||||| |||| |||||||| ||||    
T  49202637 gtataagctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaaacaacttatgaaca 49202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 4191677 - 4191705
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  4191677 cttatgtataagctatttctataacaaaa 4191705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 8422916 - 8422864
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| |||||||||||| ||| |||||||||| ||||| ||||| |||||||    
T  8422916 tataagctataagttgttttcacaatctatcttggagagtttatgcaaataag 8422864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 25487677 - 25487649
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  25487677 cttatgtataagctatttctataacaaaa 25487649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 30207648 - 30207596
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| |||||||||||| |||||| ||| ||||||||| ||||| |||||||    
T  30207648 tataagctataagttgttttcataagctaccttagagagattatggaaataag 30207596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 47970256 - 47970284
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  47970256 cttatgtataagctatttctataacaaaa 47970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 56480348 - 56480392
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataa 204  Q
    |||||| |||| |||||| ||||||| ||||||||||||||||||    
T  56480348 tataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 9174736 - 9174774
Alignment:
Q  79 tttatcatgataaacacttatgtataagctatttctata 117  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9174736 tttatcatgataaacacttatgtataagctatttctata 9174774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 9833077 - 9833121
Alignment:
Q  79 tttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||    
T  9833077 tttatcatgataaacacttatgtataatctatttccataacaaaa 9833121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 32364871 - 32364832
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataac 119  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32364871 ttatcatgataagcacttatgtataagctatttctataac 32364832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 43985082 - 43985028
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||| ||||||||||| |||||| |||||||  ||||||||||||||||||    
T  43985082 cgtataaattataagttgttttcataagctatcttgaagagcttatgaaaataag 43985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 12313230 - 12313177
Alignment:
Q  173 cataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    ||||| ||||||| |||||||||||||||||||  ||||||||||||| |||||    
T  12313230 cataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaacat 12313177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 23747225 - 23747270
Alignment:
Q  78 gtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||    
T  23747225 gtttatgatgataaacacttatgtataagctatttttatatcaaaa 23747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 29510585 - 29510637
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||||||||||||| || ||| ||||||| |||||||||||||| ||||    
T  29510585 tataaactataagttgttttcctaagctatctttgagagcttatgaaattaag 29510637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 8017352 - 8017395
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctata 117  Q
    ||||||||||||||||| || ||||||||| |||||||||||||    
T  8017352 aagtgtttatcatgatacacgcttatgtatcagctatttctata 8017395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 9174813 - 9174860
Alignment:
Q  158 actataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  9174813 actataagctgttttcataagctatcttacagagcttatgaaaataag 9174860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 10884592 - 10884545
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagt 206  Q
    ||||||| |||| |||||| ||||| ||||||||||||||||||||||    
T  10884592 ctataagctgttttcataagctatcctagagagcttatgaaaataagt 10884545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 15288751 - 15288708
Alignment:
Q  82 atcatgataaacacttatgtataagctatttctataacaaaata 125  Q
    |||| ||||| | |||||||||||||||||||||||||||||||    
T  15288751 atcaagataagcgcttatgtataagctatttctataacaaaata 15288708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 19629365 - 19629468
Alignment:
Q  162 taagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttatt-aacatataagttgctt-cataagttctcctaaatagtct 259  Q
    |||| |||| |||||| ||||  | ||||| |||||||||||||| ||||||| |||||| |   ||||||||| || |||||||||||| |||||||||    
T  19629365 taagatgttttcataagctatactggagagtttatgaaaataagttgaaatcagcttattgatgttataagttgtttccataagttctcccaaatagtct 19629464  T
Q  260 caca 263  Q
    ||||    
T  19629465 caca 19629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 39567826 - 39567869
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||    
T  39567826 ttatcatgataagcacttgtgtataagatatttctataacaaaa 39567869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 35379079 - 35379021
Alignment:
Q  167 tgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaaca 225  Q
    |||| |||||| ||||||| |||||||||||||||||||  |||| |||||||| ||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 36863695 - 36863649
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataagt 206  Q
    ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  36863695 tataaattgttttcataagctatcttggagagcttatgaaaataagt 36863649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 9556246 - 9556299
Alignment:
Q  167 tgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||| |||||| ||||| |||| ||||||||||||||||| |||||| ||||||    
T  9556246 tgttttcataagctatcctagaaagcttatgaaaataagttgaaatctacttat 9556299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 16867738 - 16867799
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||||| |||| ||| || ||||||| ||||||||||| |||||||| |||| ||||||||    
T  16867738 ctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttat 16867799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 5133710 - 5133738
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  5133710 cttatgtataagctatttctataacaaaa 5133738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 9477943 - 9478003
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    |||||||  ||||||||||| |||||| ||||| | ||||| |||||||||||||| ||||    
T  9477943 cgtataagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 22681262 - 22681210
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| ||||||| |||| |||||||||||| |||||| |||||| |||||||    
T  22681262 tataagctataagctgttttcataatctatcctagagaacttatggaaataag 22681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 26372807 - 26372740
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacata 227  Q
    |||||||||||| ||||||  |||||| ||||| || ||||||||||| |||| ||||||||| |||||    
T  26372807 ctataagttgtt-tcataagttatcttggagaggttgtgaaaataagttgaaaacaacttattcacata 26372740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 41033082 - 41033054
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  41033082 cttatgtataagctatttctataacaaaa 41033054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 9507153 - 9507104
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  9507153 aagtgcttatcataataaacactcatgtataagctatttctataacaaaa 9507104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 1005172 - 1005133
Alignment:
Q  88 ataaacacttatgtataagctatttctataacaaaataat 127  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1005172 ataaacacttatgtataaactatttctataacaaaataat 1005133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 25479580 - 25479647
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||  |||| ||||| || |||||    
T  25479580 ctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacat 25479647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 49888758 - 49888812
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||| |||| ||||||| |||||| |||||||||||| ||||||||||||||    
T  49888758 cgtataagctattagttgttttcataagctatcttagagaacttatgaaaataag 49888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 26779996 - 26779935
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||||||||||| |||||| |||||||  ||| ||||||||||||||| |||| ||||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttat 26779935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 31294597 - 31294540
Alignment:
Q  154 ataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||||||||||||||| |  ||| ||||| |||||||||||||||||||||| ||||    
T  31294597 ataaactataagttgtttttgtaaactatcatagagagcttatgaaaataagttgaaa 31294540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 31517817 - 31517694
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat---ataagttg-cttcataagttctc 248  Q
    ||||| ||||||| |||  ||||||||| |||| |||||||||||||||||||  |||| || ||||| |||||   || |||||  || ||||||||||    
T  31517817 tataagctataagctgtcttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctc 31517718  T
Q  249 ctaaatagtctcacaagtgattat 272  Q
    | ||| ||||||||||||| ||||    
T  31517717 ccaaacagtctcacaagtgcttat 31517694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 38247131 - 38247063
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||||||||||||||| | |||| ||||||| | |||||||||| ||| ||||| |||| ||||||||    
T  38247131 gtataaactataagttgctttcatgatctatcgtggagagcttataaaagtaagttgaaaacaacttat 38247063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 172716 - 172681
Alignment:
Q  88 ataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||| |||||||||||||||||||||||||||||    
T  172716 ataaactcttatgtataagctatttctataacaaaa 172681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 8852783 - 8852826
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||| ||||||||||||||| || |||||||    
T  8852783 ttatcatgataaacactaatgtataagctatttttacaacaaaa 8852826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 10199487 - 10199412
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    ||||||| | ||||| | || |||||| |||| ||||||||||||||||||||||  |||| |||||||| |||||    
T  10199487 cgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacat 10199412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 23902144 - 23902077
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    ||||| |||||||||||| ||| || ||||||||||||||||||| || ||||  |||| ||||||||    
T  23902144 tataagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaacttat 23902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 125
Target Start/End: Original strand, 2462905 - 2462935
Alignment:
Q  95 cttatgtataagctatttctataacaaaata 125  Q
    |||||||||||||||||||||||||||||||    
T  2462905 cttatgtataagctatttctataacaaaata 2462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 5894316 - 5894274
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctat 116  Q
    ||||| |||||||||||| | ||||||||||||||||||||||    
T  5894316 aagtgcttatcatgataagcgcttatgtataagctatttctat 5894274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 7218151 - 7218093
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||| |||||||||||| |||||| ||||| | |||| ||||||||||||||| ||||    
T  7218151 tataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaa 7218093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 3234086 - 3234025
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||||||||||| | |||| |||| || |||| ||||||||||||||||||||  |||||||    
T  3234086 ctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttat 3234025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 7137076 - 7137023
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||| ||||||| |||| |||||| ||||||| |||| ||||||||||||||    
T  7137076 gtataatctataagctgttttcataagctatcttggagaacttatgaaaataag 7137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 7472303 - 7472356
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||| ||||||| ||||  ||||| ||||||| |||||||||||||||||||    
T  7472303 gtataatctataagctgtttccataagctatcttggagagcttatgaaaataag 7472356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 28083360 - 28083315
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||||| || |||||||||||| || ||||||||||||||||||    
T  28083360 tataagttattatcataatctatcctaaagagcttatgaaaataag 28083315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 38882989 - 38882917
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaaca 225  Q
    ||||||| ||||||||||| |||||| || ||| ||||| ||||||||||||||| |||| || ||||| ||||    
T  38882989 gtataaaatataagttgttttcataagctctct-agagaacttatgaaaataagttgaaaacaccttatgaaca 38882917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 50319229 - 50319258
Alignment:
Q  94 acttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  50319229 acttatgtataagctatttctataacaaaa 50319258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 13037802 - 13037830
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  13037802 cttatgtataagctatttctataacaaaa 13037830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 29351567 - 29351539
Alignment:
Q  97 tatgtataagctatttctataacaaaata 125  Q
    |||||||||||||||||||||||||||||    
T  29351567 tatgtataagctatttctataacaaaata 29351539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 29793773 - 29793833
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    ||||||| ||||||||||   |||||| ||||||| |||||||||||||| ||||| ||||    
T  29793773 cgtataagctataagttgagttcataagctatcttcgagagcttatgaaactaagttgaaa 29793833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 34290228 - 34290296
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttat 220  Q
    |||||| ||||||| |||| |||||| |||||||  ||| ||||||||||||||  |||| ||||||||    
T  34290228 gtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttat 34290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 35351038 - 35351106
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacata 227  Q
    |||||||||||  |||||| ||||| |||||||||||  ||||||||  |||| |||||||| ||||||    
T  35351038 ctataagttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaacttataaacata 35351106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 36070261 - 36070297
Alignment:
Q  236 ttcataagttctcctaaatagtctcacaagtgattat 272  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  36070261 ttcataagttctcctaaacagtctcacaagtgcttat 36070297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 37241899 - 37241847
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| ||| |||||||| ||||||  |||| |||||||||||||||||||||    
T  37241899 tataagctagaagttgttttcataagatatcctagagagcttatgaaaataag 37241847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 2825308 - 2825189
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacatataagttgcttcataagttctcctaa 252  Q
    |||||||||||||||||| ||| || ||||| |||||| |||||| |||||||  ||||  ||||||| |||||| |  | | |||||||||||| | ||    
T  2825308 tataaactataagttgttttcacaagctatcctagagaacttatggaaataagctgaaaataacttatgaacata-agatggtttcataagttcttccaa 2825210  T
Q  253 atagtctcacaagtgattata 273  Q
    | ||||||||||||| |||||    
T  2825209 agagtctcacaagtgcttata 2825189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 35007617 - 35007704
Alignment:
Q  179 ctatcttagagagcttatgaaaataagtagaaatcaacttattaacatataagttgc-ttcataagttctcctaaatagtctcacaagt 266  Q
    ||||||| |||||||| ||||||||||  |||| |||||||| ||||| |||||||  |||||||||||||||||  ||||||||||||    
T  35007617 ctatctttgagagctt-tgaaaataagctgaaaacaacttatgaacatgtaagttgtgttcataagttctcctaaccagtctcacaagt 35007704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 19718930 - 19718970
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataaca 120  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  19718930 ttatcatgataaacacttgtgtgtaagctatttctataaca 19718970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 25596045 - 25596097
Alignment:
Q  172 tcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaac 224  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||    
T  25596045 tcataagctatcttggagagcttatgaaaataagttgaaaacaacttagtaac 25596097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 35266816 - 35266864
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaa 122  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||||    
T  35266816 aagtggttatcatgataaacatctatttataagctatttctataacaaa 35266864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 20881716 - 20881661
Alignment:
Q  150 ccgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| || |||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  20881716 ccgtacaagctataagttgttttcataaactatcttaaagaacttatgaaaataag 20881661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 47795880 - 47795923
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||    
T  47795880 ttatcatgataaccacttatgtataacctatttctatatcaaaa 47795923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 48917414 - 48917371
Alignment:
Q  162 taagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
T  48917414 taagttgttttcataagctatcttggagagcttatgaaaataag 48917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 39967919 - 39967985
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaaca 225  Q
    |||||||||||| |||||| |||||| ||||| || |||||||||||| |||| || ||||| ||||    
T  39967919 ctataagttgttttcataagctatctgagagaactaatgaaaataagttgaaaacagcttatgaaca 39967985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 44777135 - 44777093
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctat 116  Q
    |||||||||||||||||| |||||||| |||| ||||||||||    
T  44777135 aagtgtttatcatgataagcacttatgcataaactatttctat 44777093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 30456520 - 30456476
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataa 204  Q
    ||||||| ||| |||||| ||||||| ||||||||||||||||||    
T  30456520 tataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 33894561 - 33894589
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  33894561 cttatgtataagctatttctataacaaaa 33894589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 38010707 - 38010759
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| ||||||| |||| |||||||||||| |||||| |||||| |||||||    
T  38010707 tataagctataagctgttttcataatctatcctagagaacttatggaaataag 38010759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 8216803 - 8216846
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  8216803 ttatcatgataaacacttatgtataagccatttatataacaaaa 8216846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 9956884 - 9956839
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||    
T  9956884 tataagttgttttcataatctatcttggagaacttatgaaaataag 9956839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 8062517 - 8062569
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||| ||||||| |||| |||||| ||||||||||||| |||||||||||||    
T  8062517 tataagctataagatgttctcataagctatcttagagagtttatgaaaataag 8062569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 26473820 - 26473776
Alignment:
Q  162 taagttgttgtcataatctatcttagagagcttatgaaaataagt 206  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||    
T  26473820 taagttgttttcataagctatcctagagagcttatgaaaataagt 26473776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 8536180 - 8536149
Alignment:
Q  95 cttatgtataagctatttctataacaaaataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  8536180 cttatgtataagctatttctataacaaaataa 8536149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 26215419 - 26215462
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||| ||||||| | |||||||||||||||||||||||||||||    
T  26215419 ttataatgataagcgcttatgtataagctatttctataacaaaa 26215462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 27492882 - 27492925
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  27492882 ttatcatgataagcacttatgtataaggtatttctatagcaaaa 27492925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 37444562 - 37444519
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| | ||||||||||||||||| |||||||||||    
T  37444562 ttatcatgataagcgcttatgtataagctattactataacaaaa 37444519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 3936772 - 3936814
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaa 122  Q
    |||||||||||  ||||||||||||| ||||||||||||||||    
T  3936772 ttatcatgataggcacttatgtataatctatttctataacaaa 3936814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 7714239 - 7714293
Alignment:
Q  157 aactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaa 211  Q
    |||||||||||||| |||| | ||||||| ||||||| |||||||||||| ||||    
T  7714239 aactataagttgttttcatgagctatcttggagagctcatgaaaataagttgaaa 7714293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 10939455 - 10939501
Alignment:
Q  236 ttcataagttctcctaaatagtctcacaagtgattatactggtagat 282  Q
    |||||||||||||||||| ||||||| ||||| |||||| |||||||    
T  10939455 ttcataagttctcctaaacagtctcagaagtgcttatacaggtagat 10939501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 16162685 - 16162731
Alignment:
Q  77 tgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||||    
T  16162685 tgtttatcatgataaatgcttatgtagaagctatttccataacaaaa 16162731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 27028830 - 27028876
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||| |||| |||||| ||||||| |||||||||||||||||||    
T  27028830 ctataagctgttttcataagctatcttggagagcttatgaaaataag 27028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 31862484 - 31862538
Alignment:
Q  151 cgtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||| ||||||| |||| ||||||  |||| |||||||||||||||||||||    
T  31862484 cgtataagctataagatgttttcataagttatcctagagagcttatgaaaataag 31862538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 8062321 - 8062374
Alignment:
Q  152 gtataaactataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    |||||| ||||||| |||| |||||| ||||||||||||| ||||| |||||||    
T  8062321 gtataagctataagctgttttcataagctatcttagagagattatggaaataag 8062374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 27754401 - 27754512
Alignment:
Q  157 aactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat---ataagttg-cttcataagttctcctaa 252  Q
    |||||||||| ||| |||||| |||| || |||||||||||||||||||  |||  |||||||| | |||   ||||  ||  |||||||||||||| ||    
T  27754401 aactataagtggttttcataagctattttggagagcttatgaaaataagctgaacgcaacttataatcatgtcataaactgttttcataagttctcccaa 27754500  T
Q  253 atagtctcacaa 264  Q
    ||||||||||||    
T  27754501 atagtctcacaa 27754512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 37220253 - 37220282
Alignment:
Q  94 acttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  37220253 acttatgtataagctatttctataacaaaa 37220282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 41442582 - 41442537
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaata 125  Q
    ||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  41442582 ttatcatgataagtacttatgtataggctttttctataacaaaata 41442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 42597338 - 42597367
Alignment:
Q  94 acttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  42597338 acttatgtataagctatttctataacaaaa 42597367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 8629027 - 8629078
Alignment:
Q  74 aagtgtttatcatgataaacacttatgtataagctatttctataacaaaataa 126  Q
    ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||    
T  8629027 aagtgtttatcat-ataagtgcttatttataagctatttctataacaaaataa 8629078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 30627973 - 30627929
Alignment:
Q  159 ctataagttgttgtcataatctatcttagagagcttatgaaaata 203  Q
    |||||||||||| ||||||  |||||||||||||||||| |||||    
T  30627973 ctataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 6647394 - 6647453
Alignment:
Q  167 tgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    |||| |||||| |||||||||||||||||||||||||||| |||| || ||||| |||||    
T  6647394 tgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacat 6647453  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 20368250 - 20368142
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat---ataagttg-cttcataagttctcctaaata 255  Q
    ||||||||||| |||||| || |||| |||| ||||||||||||||| ||||  | ||||| |||||   ||||||||  |||||||||||||| |||||    
T  20368250 tataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaata 20368151  T
Q  256 gtctcacaa 264  Q
    |||| ||||    
T  20368150 gtcttacaa 20368142  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 24476530 - 24476568
Alignment:
Q  85 atgataaacacttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24476530 atgataaacacttatgtataagctatttctatagcaaaa 24476568  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 2112193 - 2112266
Alignment:
Q  153 tataaactataagttgttgtcataatctatcttagagagcttatgaaaataagtagaaatcaacttattaacat 226  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||  ||||||   |||| |||||||| |||||    
T  2112193 tataaactataagttgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacat 2112266  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 31812083 - 31812038
Alignment:
Q  160 tataagttgttgtcataatctatcttagagagcttatgaaaataag 205  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  31812083 tataagttgttttcataagctatcttggagagcttatgaaaataag 31812038  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 103373 - 103419
Alignment:
Q  77 tgtttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||| |||| |||||||||||| |||||||||||||||||| |||||    
T  103373 tgttaatcacgataaacacttacgtataagctatttctatagcaaaa 103419  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 10452492 - 10452462
Alignment:
Q  95 cttatgtataagctatttctataacaaaata 125  Q
    |||||||||||||||||||||||||||||||    
T  10452492 cttatgtataagctatttctataacaaaata 10452462  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 4247766 - 4247738
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  4247766 cttatgtataagctatttctataacaaaa 4247738  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 31461616 - 31461644
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  31461616 cttatgtataagctatttctataacaaaa 31461644  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 31668817 - 31668789
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  31668817 cttatgtataagctatttctataacaaaa 31668789  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 33069658 - 33069630
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  33069658 cttatgtataagctatttctataacaaaa 33069630  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 33736761 - 33736801
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataaca 120  Q
    |||||||||| | |||||||||||||| |||||||||||||    
T  33736761 ttatcatgatcagcacttatgtataagttatttctataaca 33736801  T

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Target: scaffold0221 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 2718 - 2761
Alignment:
Q  80 ttatcatgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||||| ||||||||||| || ||||||||||||||||    
T  2718 ttatcatgataatcacttatgtatgagttatttctataacaaaa 2761  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 104277 - 104238
Alignment:
Q  84 catgataaacacttatgtataagctatttctataacaaaa 123  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  104277 catgataaacgcttatgtataagttatttctataacaaaa 104238  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 8307 - 8278
Alignment:
Q  94 acttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  8307 acttatgtataagctatttctataacaaaa 8278  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 8231 - 8202
Alignment:
Q  94 acttatgtataagctatttctataacaaaa 123  Q
    ||||||||||||||||||||||||||||||    
T  8231 acttatgtataagctatttctataacaaaa 8202  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 1206 - 1178
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  1206 cttatgtataagctatttctataacaaaa 1178  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 2769 - 2797
Alignment:
Q  95 cttatgtataagctatttctataacaaaa 123  Q
    |||||||||||||||||||||||||||||    
T  2769 cttatgtataagctatttctataacaaaa 2797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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