View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_13 (Length: 476)
Name: NF17836_low_13
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 458
Target Start/End: Original strand, 6410941 - 6411388
Alignment:
| Q |
5 |
caatcgatttgtccaacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattttctacaacct |
104 |
Q |
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| T |
6410941 |
caatcgatatgtccaacatggaaaactgttgtgtttgtttcatttatctgtttgttagagttatttgttccttcgttgtgcattacattttatacaacct |
6411040 |
T |
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| Q |
105 |
acaatcatgcattgcattagatggtgagtggttttgttttctaagattggaatatgtatctagatgtttactaactcaatactatgtttgttagcgtatc |
204 |
Q |
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| T |
6411041 |
acaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgtttactaactcaatattatgtttgttagcgtatc |
6411140 |
T |
|
| Q |
205 |
tgctacctgctgtacaaatcctgttgtggcagtagttagaacttagaactcaatcagaacctcgtctaagtcttgcttggtcatcacaatatatcctatc |
304 |
Q |
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| T |
6411141 |
tgctacctgctgcacaaatcctgttgtggcagtggttagaacttagaactcaatcagaacctcgtctaagtcttgcttggtcatcacaatatatcatatc |
6411240 |
T |
|
| Q |
305 |
tgtgataatgattccctaggctccctccct---ttcatttcatcatctgctttgacattattactaatcgttttcatgtgcgtcagttgaatctcacctc |
401 |
Q |
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| T |
6411241 |
---------gattccctaggctccctccctttcttcatttcatcatctgctttgacattattactaatcgttttcatgtcggtcagttgaatctcacctc |
6411331 |
T |
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| Q |
402 |
tctatatctcgatactcatctgtttagtgggtctatggtcttccaaagttaggaagg |
458 |
Q |
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| T |
6411332 |
tctatatctcgatactcatctgtttagtgggtctatggtcttccaaagttaggaagg |
6411388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4967914 - 4967698
Alignment:
| Q |
18 |
caacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattttctacaacc---tacaatcatgc |
114 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||| |||||| |||| || ||| |||| |||||||||||||||| ||||||| | |||||| | |
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| T |
4967914 |
caacatgaaaaactgttgt--ttgtttcatttatctgcttgttagagttgttggttacttcattgtgcattacattttatacaacccataataatcatac |
4967817 |
T |
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| Q |
115 |
attgcattagatggtgagtggttttgttttctaagattggaatatgtatctagatgtttactaactcaatactatgtttgttagcgtatctgctacctgc |
214 |
Q |
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| T |
4967816 |
tttgcattaggtggttagtggattggttttctaagattggaataagtattcagatgtatacccagtcaatagtatgtttgttagcatatctgctacctgc |
4967717 |
T |
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| Q |
215 |
tgtacaaatcctgttgtgg |
233 |
Q |
| |
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| T |
4967716 |
tgcgcaaatcttgttgtgg |
4967698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 9819466 - 9819270
Alignment:
| Q |
18 |
caacatggaaaactgttgtgtttgtttcatttatctgtttgttaaagttatttgttccttcgttgtgcattacattttctacaacctacaatcatgcatt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||| | || | |||||||| |
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| T |
9819466 |
caacatgaaaaactgttgtgtttgtttcatttatctgtttgttaaagtcgttggttcctttgttgtgcattacattttatacagtccacgaccatgcatt |
9819367 |
T |
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| Q |
118 |
gcattagatggtgagtggttttgttttctaagattggaatatgtatctagatgtttactaactcaatactatgtttgttagcgtatctgctacctgc |
214 |
Q |
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|| |||||||| ||| |||| ||||||| ||||||||||| |||| | ||||| | | | |||||| ||||||| ||||| ||||| ||| |||| |
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| T |
9819366 |
gcgctagatggttagttgtttggttttctgagattggaataagtattttgatgtatgcctagtcaatagtatgttttttagcatatctactagctgc |
9819270 |
T |
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