View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_16 (Length: 462)

Name: NF17836_low_16
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_16
NF17836_low_16
[»] chr5 (4 HSPs)
chr5 (9-462)||(12547241-12547698)
chr5 (15-462)||(12530927-12531378)
chr5 (330-459)||(9866903-9867032)
chr5 (321-442)||(9894397-9894515)
[»] chr8 (6 HSPs)
chr8 (323-462)||(43479916-43480055)
chr8 (323-462)||(38799242-38799381)
chr8 (323-462)||(38822136-38822275)
chr8 (323-438)||(25865447-25865562)
chr8 (323-442)||(26591915-26592034)
chr8 (323-435)||(41943691-41943803)
[»] scaffold0197 (1 HSPs)
scaffold0197 (323-459)||(30759-30895)
[»] chr7 (2 HSPs)
chr7 (323-459)||(21317321-21317457)
chr7 (323-459)||(3930206-3930342)
[»] chr2 (2 HSPs)
chr2 (323-459)||(13576095-13576231)
chr2 (323-378)||(34571802-34571857)
[»] chr4 (2 HSPs)
chr4 (323-459)||(24860293-24860429)
chr4 (323-435)||(34748502-34748614)
[»] chr1 (1 HSPs)
chr1 (321-393)||(7594907-7594979)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 12547698 - 12547241
Alignment:
Q  9 gagatgaacagccgtcgataaactctccaatcaacggttcgtatcagcatttggaattagctatccgcgtgcccttcgttctagagaataacaaccgtcg 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  12547698 gagaagaacagccgtcgataaactctccaatcaacggttcgtatcagcatttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcg 12547599  T
Q  109 ataagccctctcatctacggtcacgctcttcccttttcatcatcccaaatcccaaattttcacaattcccgcttattttcacctcctaaaatttcaatct 208  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12547598 ataaaccctctcatctacggtcacaatcttcccttttcatcatcccaaatcccaaattttcacaattcccgcttattttcacctcccaaaatttcaatct 12547499  T
Q  209 tccctttataaattacaccaaacactttcctctctcaacgcaaattcaaattgaaatca----aaacaaacaaaccttaatttctctttctctctctaat 304  Q
    | |||||||||||||||||||||||||  || |||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||    
T  12547498 ttcctttataaattacaccaaacacttatctttctcaacgcaaattcaaattgaaatcaacacaaacaaacaaaccctaatttctctttctctctctaat 12547399  T
Q  305 ttcaatcctcaattcgccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccgga 404  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  12547398 ttcaattatcaattcgccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccgga 12547299  T
Q  405 aatctgctccggcaaccggaggagtcaagaagccacacagattccgtcctggaactgt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12547298 aatctgctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactgt 12547241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Original strand, 12530927 - 12531378
Alignment:
Q  15 aacagccgtcgataaactctccaatcaacggttcgtatcagcatttggaattagctatccgcgtgcccttcgttctagagaataacaaccgtcgataagc 114  Q
    ||||||||| |||||||||||||||||||||| |||||  |  |||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |    
T  12530927 aacagccgttgataaactctccaatcaacggtccgtattcgtgtttggaattagctatccgcgtgcccttcgttccagagaacaacagccgtcgataaac 12531026  T
Q  115 cctctcatctacggtcacgctcttcccttttcatcatcccaaatcccaaattttcacaattcccgcttattttcacctcctaaaatttcaatcttccctt 214  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12531027 cctctcatctacggtcacaatcttcccttttcatcatcccaaatcccaaattttcacaattcccgcttattttcacctcccaaaatttcaatctttcctt 12531126  T
Q  215 tataaattacaccaaacactttcctctctcaacgcaaattcaaattgaaatca----aaacaaacaaaccttaatttctctttctctctctaatttcaat 310  Q
    |||||||||||||||||||||  || |||||||||||||||||||||||||||    ||||||||| ||| |||||||||||||||||||||||||||||    
T  12531127 tataaattacaccaaacacttatctttctcaacgcaaattcaaattgaaatcaacacaaacaaacagaccctaatttctctttctctctctaatttcaat 12531226  T
Q  311 cctcaattcgccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctg 410  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  12531227 tatcaattcgccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctg 12531326  T
Q  411 ctccggcaaccggaggagtcaagaagccacacagattccgtcctggaactgt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12531327 ctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactgt 12531378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 330 - 459
Target Start/End: Complemental strand, 9867032 - 9866903
Alignment:
Q  330 gtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccggaggagt 429  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||| | ||  |||| ||||| |||||||| |||||||| ||||||||||| ||||||||    
T  9867032 gtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagt 9866933  T
Q  430 caagaagccacacagattccgtcctggaac 459  Q
     |||||||||||| | ||||||||||||||    
T  9866932 gaagaagccacaccgtttccgtcctggaac 9866903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 9894397 - 9894515
Alignment:
Q  321 ccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaac 420  Q
    |||||||  |||||||||||||||| |||||    || ||||| ||||||||| | || ||||||||||||||||| || || ||||| |||| |||| |    
T  9894397 ccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctctggcagc 9894493  T
Q  421 cggaggagtcaagaagccacac 442  Q
    ||||  ||| ||||||||||||    
T  9894494 cggaacagtgaagaagccacac 9894515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 323 - 462
Target Start/End: Complemental strand, 43480055 - 43479916
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| || ||||||||||| || |||||||| |||||||| ||||    
T  43480055 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccg 43479956  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaactgt 462  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  43479955 gaggagtgaagaagccacacagattccgtcctggaactgt 43479916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 462
Target Start/End: Original strand, 38799242 - 38799381
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||  |||| ||||| |||||||| || || |||||||| |||||||| ||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38799341  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaactgt 462  Q
    ||||||| ||||||||||| |||||| | |||||||||||    
T  38799342 gaggagtgaagaagccacatagattcagacctggaactgt 38799381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 462
Target Start/End: Complemental strand, 38822275 - 38822136
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||  |||| ||||| |||||||| || || |||||||| |||||||| ||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38822176  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaactgt 462  Q
    ||||||| ||||||||||| |||||| | |||||||||||    
T  38822175 gaggagtgaagaagccacatagattcagacctggaactgt 38822136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 323 - 438
Target Start/End: Original strand, 25865447 - 25865562
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| || || || |||||||||||  |||||||||||||  | ||||    
T  25865447 atggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccg 25865546  T
Q  423 gaggagtcaagaagcc 438  Q
    | ||||| ||||||||    
T  25865547 gcggagtgaagaagcc 25865562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 323 - 442
Target Start/End: Original strand, 26591915 - 26592034
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| ||||| |||||||| || ||||| ||||||||||| |||||||||||||| ||||| || || ||||| || |||||||| |||||||| ||||    
T  26591915 atggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccg 26592014  T
Q  423 gaggagtcaagaagccacac 442  Q
    | ||||| ||||||||||||    
T  26592015 gcggagtgaagaagccacac 26592034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 41943691 - 41943803
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||||||||| |||||||| ||||||||||||||||| || || || |||||||| || || |||||||| ||||| || |||||||||||  ||||||    
T  41943691 atggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccg 41943790  T
Q  423 gaggagtcaagaa 435  Q
    | |||||||||||    
T  41943791 gtggagtcaagaa 41943803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 459
Target Start/End: Original strand, 30759 - 30895
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| || ||||||||||| || |||||||| |||||||| ||||    
T  30759 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccg 30858  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaac 459  Q
    ||||||| |||||||||||| | |||||||| |||||    
T  30859 gaggagtgaagaagccacaccgtttccgtcccggaac 30895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 459
Target Start/End: Original strand, 21317321 - 21317457
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| || ||||||||||| || |||||||| |||||||| ||||    
T  21317321 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccg 21317420  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaac 459  Q
    ||||||| |||||||||||| | |||||||| |||||    
T  21317421 gaggagtgaagaagccacaccgtttccgtcccggaac 21317457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 459
Target Start/End: Complemental strand, 3930342 - 3930206
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| |||||||| |||||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||||| ||  | ||||| || ||||||||||    
T  3930342 atggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg 3930243  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaac 459  Q
    | || || ||||| ||||||||||||||||| |||||    
T  3930242 gtggtgtaaagaaaccacacagattccgtccaggaac 3930206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 323 - 459
Target Start/End: Original strand, 13576095 - 13576231
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||||| | ||||| || ||||| ||||| || |||||||| |||||||| ||||    
T  13576095 atggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccg 13576194  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaac 459  Q
    ||||||| |||||||||||  | ||||||||||||||    
T  13576195 gaggagtgaagaagccacatcgtttccgtcctggaac 13576231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 34571857 - 34571802
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaa 378  Q
    ||||| ||||| |||||||| ||||||||||||||||| || || |||||||||||    
T  34571857 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaa 34571802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 323 - 459
Target Start/End: Original strand, 24860293 - 24860429
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| ||||| || ||||    
T  24860293 atggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccg 24860392  T
Q  423 gaggagtcaagaagccacacagattccgtcctggaac 459  Q
    | ||||| ||||| || ||| | |||||||| |||||    
T  24860393 gcggagtgaagaaacctcaccgtttccgtcccggaac 24860429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 435
Target Start/End: Original strand, 34748502 - 34748614
Alignment:
Q  323 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaaagctgcccggaaatctgctccggcaaccg 422  Q
    ||||| |||||||||||||| |||||||||||||| || || ||||| |||||||| || || ||||| ||||| || || |||||||||||||| ||||    
T  34748502 atggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccg 34748601  T
Q  423 gaggagtcaagaa 435  Q
    | ||||| |||||    
T  34748602 gtggagtgaagaa 34748614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 7594979 - 7594907
Alignment:
Q  321 ccatggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaaacagcttgccaccaa 393  Q
    |||||||||||||||||||||| |||||||| || ||||| || || || |||||||| ||||| ||||||||    
T  7594979 ccatggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgccaccaa 7594907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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