View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_17 (Length: 447)
Name: NF17836_low_17
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 18705479 - 18705912
Alignment:
| Q |
1 |
tgcaatagaattcacaaaattaaaaatcgaaacaacccaaagctactacaaaccaaaagattcagagataaaatgatgtggcttatttgctggcctcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18705479 |
tgcaatagaattcacaaaattaaaaatcgaaacagcccaaagctactacaaaccaaaagattcagagatgaaatgatgtggcttatttgctggcctcaga |
18705578 |
T |
|
| Q |
101 |
ttaataattctgttttctcagacaagcctctaaatgtggagcaactcgtagataggattaagtcctcgtgaaaatggtttcttggcaagaccttagggaa |
200 |
Q |
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| T |
18705579 |
ttaatgattctattttctcagacaagcttctaaatgtggagcaactcgtagataggattaagtcctcgtgaaaatggtttcttggcaagaacttcgggaa |
18705678 |
T |
|
| Q |
201 |
ttcttgttttaattatgagtaggaaggtggaacctattctacgtttgggccgatcgagatttgtgtagggggttcagtagggtagtctatgctcgaaggt |
300 |
Q |
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| T |
18705679 |
ttcttgttttaattatgagtaggaaggtggaacctattctacgtttgggccgatcgagatttgtgtagggggttcagtatggtggtctatgctcgaaggt |
18705778 |
T |
|
| Q |
301 |
ggcttttcttggcagggaggttttcctccgttcttttgcttaggttcctttgttcagtccattctttgttgctctggtgcttgagatgcttagctccgga |
400 |
Q |
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| T |
18705779 |
ggcttttcttggcagggaggttttcctccgttcttttgcttaggttcctttgttcagtccattctttgttgctctggtgcttaagatgcttagctccgga |
18705878 |
T |
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| Q |
401 |
tacacgttttcgttgtttttgcttttgtcttgat |
434 |
Q |
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| T |
18705879 |
tacacgttttcgttgtttttgcttttgccttgat |
18705912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 15742526 - 15742959
Alignment:
| Q |
1 |
tgcaatagaattcacaaaattaaaaatcgaaacaacccaaagctactacaaaccaaaagattcagagataaaatgatgtggcttatttgctggcctcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15742526 |
tgcaatagaattcacaaaattaaaaatcgaaacagcccaaagctactacaaaccaaaagattcagagatgaaatgatgtggcttatttgctggcctcaga |
15742625 |
T |
|
| Q |
101 |
ttaataattctgttttctcagacaagcctctaaatgtggagcaactcgtagataggattaagtcctcgtgaaaatggtttcttggcaagaccttagggaa |
200 |
Q |
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||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
15742626 |
ttaatgattctattttctcagacaagcttctaaatgtggagcaactcgtagataggattaagtcctcgtgaaaatggtttcttggcaagaacttcgggaa |
15742725 |
T |
|
| Q |
201 |
ttcttgttttaattatgagtaggaaggtggaacctattctacgtttgggccgatcgagatttgtgtagggggttcagtagggtagtctatgctcgaaggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
15742726 |
ttcttgttttaattatgagtaggaaggtggaacctattctacgtttgggccgatcgagatttgtgtagggggttcagtatggtggtctatgctcgaaggt |
15742825 |
T |
|
| Q |
301 |
ggcttttcttggcagggaggttttcctccgttcttttgcttaggttcctttgttcagtccattctttgttgctctggtgcttgagatgcttagctccgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15742826 |
ggcttttcttggcagggaggttttcctccgttcttttgcttaggttcctttgttcagtccattctttgttgctctggtgcttaagatgcttagctccgga |
15742925 |
T |
|
| Q |
401 |
tacacgttttcgttgtttttgcttttgtcttgat |
434 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
15742926 |
tacacgttttcgttgtttttgcttttgccttgat |
15742959 |
T |
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