View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_18 (Length: 443)

Name: NF17836_low_18
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_18
NF17836_low_18
[»] chr8 (1 HSPs)
chr8 (16-432)||(15663479-15663902)
[»] chr4 (2 HSPs)
chr4 (91-163)||(13119464-13119536)
chr4 (51-84)||(4826303-4826336)
[»] chr2 (3 HSPs)
chr2 (64-140)||(40800194-40800270)
chr2 (35-141)||(17560834-17560940)
chr2 (35-131)||(32648166-32648261)
[»] chr3 (1 HSPs)
chr3 (141-228)||(52455192-52455279)
[»] chr7 (2 HSPs)
chr7 (35-84)||(26563044-26563093)
chr7 (41-144)||(5955105-5955208)
[»] chr6 (1 HSPs)
chr6 (35-76)||(33189608-33189649)
[»] chr1 (1 HSPs)
chr1 (95-144)||(32875450-32875499)
[»] chr5 (2 HSPs)
chr5 (258-291)||(13769656-13769689)
chr5 (35-80)||(17249417-17249462)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 15663479 - 15663902
Alignment:
Q  16 aaactataggaacgaccatgcctccaacggctccctgatgaggccctgcatttcacggaagtcgttagcatcgctttcacctatataaggatgactcaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15663479 aaactataggaacgaccatgcctccaacggctccctgatgaggcgctgcatttcacggaagtcgttagcatcactttcacctatataaggatgactcaac 15663578  T
Q  116 gtcgccctcaaggtacgactcattttcactcacacttaggcatattcatcctcatttcatacaatgacttggacgttggagtacttacgtgttcgcaagc 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15663579 gtcaccctcaaggtacgactcattttcactcacacttaggcatattcatcctcatttcatacaatgacttggatgttggagtacttacgtgttcgcaagc 15663678  T
Q  216 acttttcactctgactgcaccaccaccgtaccgaaaca-------cggctgttgcctctatctaatcacttccggacaaatcattatccaatcgaccaac 308  Q
    ||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  15663679 acttttcactctgactgcaccgccaccgtaccgaaacacagcatgcggctgttgcctctatctaatcactgccggacaaatcattatctaatcgaccaac 15663778  T
Q  309 tgaatatcttgtaaagaacccggactccatggtgcattcacgagaatattaaagccttcaacagctagaaaataaattaaagtaaacaaaattgcaatta 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |    
T  15663779 tgaatatcttgtaaagaacccggactccatggtgcattcacgagaatattaaagccttcaacaactagaaaataaattaaattaaacaaaattgcaatca 15663878  T
Q  409 aataatgcacatcctacggttcat 432  Q
    ||||||| ||||||||||||||||    
T  15663879 aataatgtacatcctacggttcat 15663902  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 13119536 - 13119464
Alignment:
Q  91 ttcacctatataaggatgactcaacgtcgccctcaaggtacgactcattttcactcacacttaggcatattca 163  Q
    ||||||||||||||| |||||||||||| | |||||||||||| |||||| | | || |||||| ||||||||    
T  13119536 ttcacctatataagggtgactcaacgtcactctcaaggtacgattcatttacgcacatacttagacatattca 13119464  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 4826336 - 4826303
Alignment:
Q  51 tgatgaggccctgcatttcacggaagtcgttagc 84  Q
    ||||||||| ||||||||||||||||||||||||    
T  4826336 tgatgaggcgctgcatttcacggaagtcgttagc 4826303  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 40800270 - 40800194
Alignment:
Q  64 catttcacggaagtcgttagcatcgctttcacctatataaggatgactcaacgtcgccctcaaggtacgactcattt 140  Q
    |||||||||||||||||||||||| | ||| ||||||||||| ||| |   |||| |||||||||||||| ||||||    
T  40800270 catttcacggaagtcgttagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcattt 40800194  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 17560940 - 17560834
Alignment:
Q  35 gcctccaacggctccctgatgaggccctgcatttcacggaagtcgttagcatcgctttcacctatataaggatgactcaacgtcgccctcaaggtacgac 134  Q
    |||||||||||||| |||||||||| | || ||||| |||| | ||||||  | | ||| ||||||||||| ||| ||  |||| |||||||||||| |     
T  17560940 gcctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacaat 17560841  T
Q  135 tcatttt 141  Q
    |||||||    
T  17560840 tcatttt 17560834  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 32648261 - 32648166
Alignment:
Q  35 gcctccaacggctccctgatgaggccctgcatttcacggaagtcgttagcatcgctttcacctatataaggatgactcaacgtcgccctcaaggtac 131  Q
    ||||||||| ||| ||||||||||| |   |||||||||||| ||||||||   | ||| ||||||||| | |||||||||||| || |||||||||    
T  32648261 gcctccaacagcttcctgatgaggcacca-atttcacggaagccgttagcacatccttctcctatataaaggtgactcaacgtcaccttcaaggtac 32648166  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 52455279 - 52455192
Alignment:
Q  141 tcactcacacttaggcatattcatcctcatttcatacaatgacttggacgttggagtacttacgtgttcgcaagcacttttcactctg 228  Q
    |||| |||||||||||||||||| ||||||||  || | |||||||||| || |||| || ||||||||||| |||| || |||||||    
T  52455279 tcacacacacttaggcatattcaacctcattttttatactgacttggacatttgagtgctaacgtgttcgcatgcaccttccactctg 52455192  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 26563093 - 26563044
Alignment:
Q  35 gcctccaacggctccctgatgaggccctgcatttcacggaagtcgttagc 84  Q
    ||||||||| ||||||||||||||  ||||||||||| ||||||||||||    
T  26563093 gcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagc 26563044  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 5955105 - 5955208
Alignment:
Q  41 aacggctccctgatgaggccctgcatttcacggaagtcgttagcatcgctttcacctatataaggatgactcaacgtcgccctcaaggtacgactcattt 140  Q
    ||||| ||||||||||||| | |||||| | | |||| |||||| || ||||| |||||| |||| |||||||||||| |   |||| ||||| ||||||    
T  5955105 aacggttccctgatgaggcgccgcattttatgaaagttgttagcgtctctttcgcctatacaagggtgactcaacgtcacttccaagatacgattcattt 5955204  T
Q  141 tcac 144  Q
    ||||    
T  5955205 tcac 5955208  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 33189649 - 33189608
Alignment:
Q  35 gcctccaacggctccctgatgaggccctgcatttcacggaag 76  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  33189649 gcctccaacggctgcctgatgaggcgctgcatttcacggaag 33189608  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 32875450 - 32875499
Alignment:
Q  95 cctatataaggatgactcaacgtcgccctcaaggtacgactcattttcac 144  Q
    ||||||||||| |||||||||||| |||||||||||| | ||||||||||    
T  32875450 cctatataagggtgactcaacgtcaccctcaaggtacaattcattttcac 32875499  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 13769689 - 13769656
Alignment:
Q  258 tgttgcctctatctaatcacttccggacaaatca 291  Q
    ||||||||||||||||||||| ||||||||||||    
T  13769689 tgttgcctctatctaatcactaccggacaaatca 13769656  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 17249417 - 17249462
Alignment:
Q  35 gcctccaacggctccctgatgaggccctgcatttcacggaagtcgt 80  Q
    ||||||||||||||||||||||||  | || |||||||||||||||    
T  17249417 gcctccaacggctccctgatgaggtgccgcgtttcacggaagtcgt 17249462  T

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