View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_19 (Length: 441)
Name: NF17836_low_19
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 2 - 430
Target Start/End: Original strand, 44261263 - 44261692
Alignment:
| Q |
2 |
tggcattagttaacgatcaaatctcaagattggtgtttctattcatcttctcacatgttcaaaacacttcagattcatttcaagaattgtcactcctgag |
101 |
Q |
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| T |
44261263 |
tggcattagttaacgatcaaatctcaagattggtgtttctattcatcttctcacatgttcaaaacacttcagattcatttcaagaattgttactcctgag |
44261362 |
T |
|
| Q |
102 |
ttctacctacttcctctctaatagattcgtttatgatcttatttggtatgaccattcatcgaaaaacaaaaatatcaaataatggtatatgctctcnnnn |
201 |
Q |
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| T |
44261363 |
ttctacctacttcctctctaatagattcgtttatgatcttatttggtatgaccattcatcgaaaaacaaaaatatcaaataatggtatatgctctctttt |
44261462 |
T |
|
| Q |
202 |
nnn-cttcctgagaggaggctatcttatgctcttgttgatcctttatcacccaacactcagtagtacacatcaagtaatgaacagtcaatgctgttcggt |
300 |
Q |
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| T |
44261463 |
ttttcttcctgagaggaggctatcttatgctcttgttgatcctttatcacccaacactcagtagtacacatcaagtaatgaacagtcaatgctgttcggt |
44261562 |
T |
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| Q |
301 |
tttatttttctgaaaactactttcttcaccttttttcctttgtatcacaacaatgacaatgttaggtaatataagcatatgctggttctatttatctgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44261563 |
tttatttttctgaaaactactttcttcaccttttttcctttgtatcacaacaatgacaatgttaggtaatataagcatatgctgtttctatttatctgtg |
44261662 |
T |
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| Q |
401 |
acataaaatgcatgaacccctaacccctat |
430 |
Q |
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| T |
44261663 |
acataaaatgcatgaacccctaacccctat |
44261692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 49441346 - 49441396
Alignment:
| Q |
317 |
ctactttcttcaccttttttcctttgtatcacaacaatgacaatgttaggt |
367 |
Q |
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| T |
49441346 |
ctactttcttcaattttttccctttgtatcacaacaatgacaatgttaggt |
49441396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 49286544 - 49286491
Alignment:
| Q |
317 |
ctactttcttcaccttttttcctttgtatcacaacaatgacaatgttaggtaat |
370 |
Q |
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|||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
49286544 |
ctacgttcttcacctttttccctttagatcacaacaatgacaacattaggtaat |
49286491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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