View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_20 (Length: 413)
Name: NF17836_low_20
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 37214484 - 37214732
Alignment:
| Q |
18 |
aaagataccaccacaagtagctttagttggggtttcaaatgtcgaagaatatgtattacacttatctaattcaacagagggggttaccagattacttctt |
117 |
Q |
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| T |
37214484 |
aaagattccaccacaagtagctttagttggggtttcaaatgtcgcaccatatgtattacacttatctaattcaacagagggggttaccagattacttctt |
37214583 |
T |
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| Q |
118 |
ttataacatgggcctttgaattttttgaattcagaaatagaacttcatgcattcttctttgtcttgttaacagaaactgaaacatttgagattatcaagt |
217 |
Q |
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| T |
37214584 |
ttataacatgggcctttgaattttttgaattcagaaatagaacttcatgcattcttctttgtcttgttaacagaaactgaaacatttgagattatcaagt |
37214683 |
T |
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| Q |
218 |
tgagagctcacttccaatgggtttgttgtcattgattttttatttagac |
266 |
Q |
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| T |
37214684 |
tgagagctcacttccaatgggtttgttgtcattgattttttatttagac |
37214732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 37214800 - 37214863
Alignment:
| Q |
332 |
gaaaatttgtcaaacaatcacttcagtgatatcacctcaaaggttttgaggtaatgtaatgttt |
395 |
Q |
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| T |
37214800 |
gaaaatttgtcaaacaatcacttcagtgatatcacctcaaaggttttgaggtaatgtaatgttt |
37214863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 31974768 - 31974850
Alignment:
| Q |
143 |
tgaattcagaaatagaacttcatgcattcttctttgtcttgttaacagaaactgaaacatttgagattatcaagttgagagct |
225 |
Q |
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| T |
31974768 |
tgaatttagaagtagatctccaagcatttttctttgtcttgttattagagagtaaaacatttgaaattatcaagttgacagct |
31974850 |
T |
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