View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17836_low_22 (Length: 410)

Name: NF17836_low_22
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17836_low_22
NF17836_low_22
[»] chr4 (13 HSPs)
chr4 (232-392)||(52986840-52987000)
chr4 (9-128)||(52986621-52986736)
chr4 (232-310)||(55659810-55659888)
chr4 (21-126)||(54626843-54626946)
chr4 (232-302)||(54862634-54862704)
chr4 (233-314)||(55634843-55634924)
chr4 (21-126)||(54862405-54862508)
chr4 (57-126)||(51315717-51315786)
chr4 (260-314)||(50192566-50192620)
chr4 (37-128)||(55635043-55635132)
chr4 (57-110)||(50192334-50192387)
chr4 (59-107)||(3672106-3672154)
chr4 (259-314)||(54626642-54626697)
[»] chr3 (1 HSPs)
chr3 (233-314)||(16437813-16437894)
[»] chr2 (2 HSPs)
chr2 (232-319)||(13401034-13401121)
chr2 (59-126)||(13401227-13401294)
[»] chr8 (2 HSPs)
chr8 (59-107)||(9889346-9889394)
chr8 (237-299)||(9889162-9889224)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 232 - 392
Target Start/End: Original strand, 52986840 - 52987000
Alignment:
Q  232 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggagagcttttttctacacac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52986840 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacagcagattgaataacttgctcaatcggagagcttttttctacacac 52986939  T
Q  332 aaacatcaaacgctttaacagttagaatgaaagcaacatagtagtaatgtaatgcattaaa 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986940 aaacatcaaacgctttaacagttagaatgaaagcaacatagtagtaatgtaatgcattaaa 52987000  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 52986621 - 52986736
Alignment:
Q  9 acatcatcatgaggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtt 108  Q
    ||||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52986621 acatcatcatgaggtgaact----agcttgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtt 52986716  T
Q  109 tgaaagtgccgaagcagctt 128  Q
    |||||||||||||| |||||    
T  52986717 tgaaagtgccgaagtagctt 52986736  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 55659810 - 55659888
Alignment:
Q  232 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatc 310  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||    
T  55659810 ctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacgccagattgaataacatgatcaatc 55659888  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 54626946 - 54626843
Alignment:
Q  21 ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga 120  Q
    |||||||| || || |||||||||||||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||| |||||||||  |||||| |    
T  54626946 ggtgaactaagaagcttgacaaacattggtactgcgc--catgatcaactaccaccttagtgttctcagaagttccagctgctatgtttgtgagtgccca 54626849  T
Q  121 agcagc 126  Q
    ||||||    
T  54626848 agcagc 54626843  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 54862634 - 54862704
Alignment:
Q  232 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataactt 302  Q
    |||||||||||| ||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  54862634 ctgaagttgaggaaaatcctccctatatagaaattgaacaaaacgaggaacaacaccagattgaataactt 54862704  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 55634924 - 55634843
Alignment:
Q  233 tgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 314  Q
    |||||| |||| |||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  55634924 tgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataacttggtcaatcggag 55634843  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 54862405 - 54862508
Alignment:
Q  21 ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga 120  Q
    |||||||| ||||| |||| ||| ||||||||||| |  |||||||||||||||||||||||||||  |||||||||| | |||||||||  |||||| |    
T  54862405 ggtgaactaagtagcttgataaatattggtactgccc--catgatcaattaccaccttagtgttctccgaagttccagatgctatgtttgtgagtgccca 54862502  T
Q  121 agcagc 126  Q
    ||||||    
T  54862503 agcagc 54862508  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 51315786 - 51315717
Alignment:
Q  57 ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc 126  Q
    ||||||||||||||| || ||||||||||| ||||||||||||| ||||||||| ||||||  |||||||    
T  51315786 ctccatgatcaattagcaacttagtgttctcagaagttccagctgctatgtttgtaagtgcgaaagcagc 51315717  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 50192566 - 50192620
Alignment:
Q  260 agaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 314  Q
    ||||||||||||||||| || |||||||||||||||||||| | |||||||||||    
T  50192566 agaaactcaacaaaacgtggcacaacaccagattgaataacctcctcaatcggag 50192620  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 55635132 - 55635043
Alignment:
Q  37 tgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagctt 128  Q
    ||||||||||||||| || || || |||||||||||||||||| |||||| ||||||||| | | |||||||||  |||||| |||||||||    
T  55635132 tgacaaacattggtattg-tc-ccgtgatcaattaccaccttaatgttctcagaagttccggatgctatgtttgtgagtgcccaagcagctt 55635043  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 50192334 - 50192387
Alignment:
Q  57 ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttg 110  Q
    |||| |||||||| |||||||||||||||| ||||||||||| | |||||||||    
T  50192334 ctccgtgatcaatcaccaccttagtgttctcagaagttccagatgctatgtttg 50192387  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3672106 - 3672154
Alignment:
Q  59 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt 107  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  3672106 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 3672154  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 54626697 - 54626642
Alignment:
Q  259 tagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 314  Q
    |||||| | ||||||||| ||||||||||||||||||||||| |  ||||||||||    
T  54626697 tagaaattgaacaaaacggggaacaacaccagattgaataacatcatcaatcggag 54626642  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 16437894 - 16437813
Alignment:
Q  233 tgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 314  Q
    |||||| |||| |||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  16437894 tgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataacttggtcaatcggag 16437813  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 13401121 - 13401034
Alignment:
Q  232 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggagagctt 319  Q
    ||||||||| || ||||| |||| || |||||||| |||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  13401121 ctgaagttggggaaaatcctcccgaactagaaactgaacaaagcggggaacaacaccagattgaataacttcctcaatcggagggctt 13401034  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 13401294 - 13401227
Alignment:
Q  59 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc 126  Q
    ||||||||||||||||||||||| |||| ||||||||| | | ||||||||| ||| ||| |||||||    
T  13401294 ccatgatcaattaccaccttagtattctcagaagttccggatgctatgtttgtaagagcccaagcagc 13401227  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 9889394 - 9889346
Alignment:
Q  59 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt 107  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  9889394 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 9889346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 9889224 - 9889162
Alignment:
Q  237 gttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataa 299  Q
    ||||||| ||||||||  ||| |||||| ||||||| |||||||||| || ||||||||||||    
T  9889224 gttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacagcatcagattgaataa 9889162  T

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