View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_23 (Length: 400)
Name: NF17836_low_23
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 4922754 - 4922388
Alignment:
| Q |
20 |
ctcagcaccattgcccatattagcttgcatatctcctacattcaccagcccagatgcatcacccttattaccctcattccctattccattcatatcttca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922754 |
ctcagcaccattgcccatattagcttgcatatctcctacattcaccagcccagatgcatcacccttattaccctcattccctattccattcatatcttca |
4922655 |
T |
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| Q |
120 |
gctccatttccagcttcctcttgagattgaatttccgccgattgcaacctccaatcaatttccttcagattgtcatttataaaggccgccaggtcattaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922654 |
gctccatttccagcttcctcttgagattgaatttccgccgattgcaacctccaatcaatttccttcagattgtcatttataaaggccgccaggtcattaa |
4922555 |
T |
|
| Q |
220 |
gttcattcacattcacatcctcgatacgatattgtctagtactaaatactttcgtaataaatagggcgaattcattcttcttgtttgtctccatttgttt |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4922554 |
gttcattcacattcacatcctcgacacgatattgtctagtactaaatactttagtaataaatagggcgaattcattcttcttgtttgcctccatttgttt |
4922455 |
T |
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| Q |
320 |
cctcaacagcaattgagatttcgcaatactttggttcaagtaagctgtcaaatccaccatatttttg |
386 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922454 |
cctcaacagcaattgagattttgcaatactttggttcaagtaagctgtcaaatccaccatatttttg |
4922388 |
T |
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