View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_24 (Length: 393)
Name: NF17836_low_24
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34068137 - 34067920
Alignment:
| Q |
1 |
ttgaatgtgaacggacattgacctcatagtttaaacttgaagttgcctttcaatagatattgatacctgtctcacactcattactgccaatattgtaaaa |
100 |
Q |
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| T |
34068137 |
ttgaatgtgaaaggaaattgacctaatagtgtaaacttgaagttgaccttcaatagat--tgatacctgtctcacactcattactgccaatattgtaaaa |
34068040 |
T |
|
| Q |
101 |
tgattaacgtatacccttttgaatggatggggtggggtagtatttgttgttaaaaaacttactatttcgatgttaatctcaaaattaatcagttgattag |
200 |
Q |
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| T |
34068039 |
tgattaatgtatacccttttgaatggatggggtggggtagtatttgttgttaaaaaacttactatttcgatgttaatctcaaaattaatcagttgattag |
34067940 |
T |
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| Q |
201 |
tgattttatgacatcaaatt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34067939 |
tgattttatgacatcaaatt |
34067920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 34067882 - 34067794
Alignment:
| Q |
217 |
aattaagcatattgttgattgatggcattagaaaaccaagtttaacaaaggtaaaacacataacccagtttagtgctcgtctactcgag |
305 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34067882 |
aattaagcatattgttgattgatggcatgagaaaaccaagtttaacaaaggtaaaacacataacccagtttagtgctcgtctactcgag |
34067794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 34067762 - 34067734
Alignment:
| Q |
343 |
gtcagaatatattagtctttgtgtcaata |
371 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34067762 |
gtcagaatatattagtctttgtgtcaata |
34067734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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