View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_30 (Length: 363)
Name: NF17836_low_30
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_30 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 24990553 - 24990915
Alignment:
| Q |
1 |
agaattcataaatccaaaggatgaagaaaagccggtatacgaggtttgtgttttctctctactcatttcacaaaagaaaatatcatctactcgtgcattt |
100 |
Q |
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| T |
24990553 |
agaattcataaatccaaaggatgaagaaaagccagtatacgaggtttgtgttttctctctactcatttcacaaaagaaaatatcatctactcgtgcattt |
24990652 |
T |
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| Q |
101 |
tcgccagcaaagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactgtagttttgaatgtaccggaaatttgaacgttctaa |
200 |
Q |
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| T |
24990653 |
tcgccggcaaagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactatagttttgaatgtaccggaaatttgaacgttctaa |
24990752 |
T |
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| Q |
201 |
gagatagcttcttatctgttcatgaggtatatttatattcatacagtaacaaaaaattaccagtaatttcgttggcatagttttatatttttctttgaaa |
300 |
Q |
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| T |
24990753 |
gagatagcttcttatctgttcatgaggtatatttatattcatatagtagcaaaaaattaccagtaattttgttggcatagttttatatttttctttgaaa |
24990852 |
T |
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| Q |
301 |
actcggtatttggtcaaagaataaagctaatccggaccaccaaaaatatcttatcaaaccaaa |
363 |
Q |
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| T |
24990853 |
actcggtatttggtcaaagaataaagctaatccggaccaccaaaaatatcttatcaaaccaaa |
24990915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 24994459 - 24994571
Alignment:
| Q |
121 |
tcatttgcagataatcagagaaatgactgatggaggtgtagactgtagttttgaatgtaccggaaatttgaacgttctaagagatagcttcttatctgtt |
220 |
Q |
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| T |
24994459 |
tcatttgcagaaaatcagagaaatgactggaggaggtgtacactacagttttgaatgcacaggaaatgtgaacgttttaagggattccttcttgtcctgt |
24994558 |
T |
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| Q |
221 |
catgaggtatatt |
233 |
Q |
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| T |
24994559 |
catgaggtatatt |
24994571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 24994358 - 24994431
Alignment:
| Q |
5 |
ttcataaatccaaaggatgaagaaaagccggtatacgaggtttgtgttttctctctactcatttcacaaaagaa |
78 |
Q |
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| T |
24994358 |
ttcataaatccaagggatgaagagaagcctgtggttgaggttggtgttttctctcctcgcatttcacaaaagaa |
24994431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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