View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17836_low_32 (Length: 358)
Name: NF17836_low_32
Description: NF17836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17836_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 8992084 - 8991815
Alignment:
| Q |
15 |
agcagagactataactaaatactgtctcaaagaaattacagcagatggaagctgtaaagatcaaataaatgattgtagagaagaattcatgtctggagta |
114 |
Q |
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| T |
8992084 |
agcagagactgtaactaaatattgtctcaaagagattacagcagatggaagctgtaaagatgaattaaatgattgtagagaagaattcatgtctggagta |
8991985 |
T |
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| Q |
115 |
ggatcatggaccatggctcaagattgtcaatgtcaacaactttcggaaaataagcgtcgttgtcaatgttgcatcaattgtggtatcgaacccaacttat |
214 |
Q |
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| T |
8991984 |
ggatcatggaccatggctcaggattgtcaatgtcaacaactttcagataataagcgtcgatgccaatgttgcatcaattgtggtatcgaacccaacttat |
8991885 |
T |
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| Q |
215 |
tacgcgacactttacatgtacgccaaattgatgggaagcgtgatagatgtagcaagtaattttgtagaaa |
284 |
Q |
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| T |
8991884 |
tacacgacactttacatgtacgccaaattgatgggaagcatgatagatgtagcaggtaattttgtagaaa |
8991815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 9016531 - 9016262
Alignment:
| Q |
15 |
agcagagactataactaaatactgtctcaaagaaattacagcagatggaagctgtaaagatcaaataaatgattgtagagaagaattcatgtctggagta |
114 |
Q |
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| T |
9016531 |
agcagagactgtaactaaatattgtctcaaagagattacagcagatggaagctgtaaagatgaattaaatgattgtagagaagaattcatgtctggagta |
9016432 |
T |
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| Q |
115 |
ggatcatggaccatggctcaagattgtcaatgtcaacaactttcggaaaataagcgtcgttgtcaatgttgcatcaattgtggtatcgaacccaacttat |
214 |
Q |
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| T |
9016431 |
ggatcatggaccatggctcaggattgtcaatgtcaacaactttcagataataagcgtcgatgccaatgttgcatcaattgtggtatcgaacccaacttat |
9016332 |
T |
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| Q |
215 |
tacgcgacactttacatgtacgccaaattgatgggaagcgtgatagatgtagcaagtaattttgtagaaa |
284 |
Q |
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| T |
9016331 |
tacacgacactttacatgtacgccaaattgatgggaagcatgatagatgtagcaggtaattttgtagaaa |
9016262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 8940972 - 8941083
Alignment:
| Q |
84 |
tgattgtagagaagaattcatgtctggagtaggatcatggaccatggctcaagattgtcaatgtcaacaactttcggaaaataagcgtcgttgtcaatgt |
183 |
Q |
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| T |
8940972 |
tgattgtacagatgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaactttcaagtaataagcgtcgatgtcaatgt |
8941071 |
T |
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| Q |
184 |
tgcatcaattgt |
195 |
Q |
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| T |
8941072 |
tgtatcaattgt |
8941083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 8991810 - 8991779
Alignment:
| Q |
306 |
tgtagttaatagttaatgaaatttaataataa |
337 |
Q |
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| T |
8991810 |
tgtagttaatagttaatgaaatttaataataa |
8991779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 337
Target Start/End: Complemental strand, 9016257 - 9016226
Alignment:
| Q |
306 |
tgtagttaatagttaatgaaatttaataataa |
337 |
Q |
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| T |
9016257 |
tgtagttaatagttaatgaaatttaataataa |
9016226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 8982500 - 8982455
Alignment:
| Q |
128 |
tggctcaagattgtcaatgtcaacaactttcggaaaataagcgtcg |
173 |
Q |
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| T |
8982500 |
tggctcatgattgtgaatgtcaagaacttttggaaaataagcgtcg |
8982455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 8984271 - 8984230
Alignment:
| Q |
113 |
taggatcatggaccatggctcaagattgtcaatgtcaacaac |
154 |
Q |
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| T |
8984271 |
taggatcttggaccatgactcaagattgtgaatgtcaacaac |
8984230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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